Gene detail information of Glyur000007s00002795.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G11630.11.00E-106Thioredoxin superfamily protein
NRXP_004494240.11.92E-166PREDICTED: 2-Cys peroxiredoxin BAS1-like, chloroplastic-like isoform X2 [Cicer arietinum]
COGYP_007108815.11.00E-104alkyl hydroperoxide reductase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9C5R8|BAS1B_ARATH1.00E-1402-Cys peroxiredoxin BAS1-like, chloroplastic (Precursor)
trEMBLtr|G7ZUV5|G7ZUV5_MEDTR4.00E-1572-cys peroxiredoxin BAS1 {ECO:0000313|EMBL:AES82993.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00007175986179087-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03386PRDX2_4, ahpC EC:1.11.1.15 Apoptosis - fly map04214


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016209  antioxidant activity

GO:0016491  oxidoreductase activity

GO:0051920  peroxiredoxin activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000007s00002795.1PF00578.16AhpC-TSA722057.80E-41
Glyur000007s00002795.1PF10417.41-cysPrx_C2262617.40E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.567
SRR1783600control56.156
SRR1783602moderate drought stress44.912
SRR1811619moderate drought stress44.220

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain90.552
DRR006520Root Summer glycyrrhizin high producing strain90.948
DRR006521Root Winter glycyrrhizin high producing strain36.243
DRR006522Root Winter glycyrrhizin high producing strain35.465
DRR006523Root Summer glycyrrhizin low producing strain60.123
DRR006524Root Summer glycyrrhizin low producing strain58.670
DRR006525Leaf Summer glycyrrhizin high producing strain413.449
DRR006526Leaf Summer glycyrrhizin high producing strain407.667

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)104.233
SRR2868004Drought Stress(Tissue:root)72.985
SRR2967015Control (Tissue:root)77.150

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave435.518
SRR9715740Leave460.530
SRR9715741Leave346.044
SRR9715739Root152.512
SRR9715742Root105.127
SRR9715743Root109.867

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.640
SRR8749028MeJA induced 9h18.869
SRR8749029MeJA induced 9h26.996
SRR8749030Uninduced8.561
SRR8749031Uninduced3.102
SRR8749032Uninduced6.926

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root143.298
SRR8400027Control-Root144.455

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved