Gene detail information of Glyur000007s00002824.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36090.1 | 4.00E-58 | F-box family protein |
| NR | XP_007162937.1 | 5.29E-160 | hypothetical protein PHAVU_001G192900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9XIN8|FB119_ARATH | 2.00E-79 | F-box protein At2g27310 |
| trEMBL | tr|V7D172|V7D172_PHAVU | 2.00E-160 | Uncharacterized protein {ECO:0000313|EMBL:ESW34931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 327269 | 328279 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.908 |
| SRR1783600 | control | 0.847 |
| SRR1783602 | moderate drought stress | 0.506 |
| SRR1811619 | moderate drought stress | 0.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.586 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.072 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 55.660 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.106 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.795 |
| SRR2967015 | Control (Tissue:root) | 63.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.053 |
| SRR9715740 | Leave | 3.947 |
| SRR9715741 | Leave | 10.058 |
| SRR9715739 | Root | 81.577 |
| SRR9715742 | Root | 92.934 |
| SRR9715743 | Root | 87.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.978 |
| SRR8749028 | MeJA induced 9h | 32.624 |
| SRR8749029 | MeJA induced 9h | 36.858 |
| SRR8749030 | Uninduced | 2.815 |
| SRR8749031 | Uninduced | 1.409 |
| SRR8749032 | Uninduced | 19.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.519 |
| SRR8400027 | Control-Root | 19.165 |