Gene detail information of Glyur000007s00002829.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08370.1 | 1.00E-69 | decapping 1 |
| NR | XP_004494216.1 | 3.89E-178 | PREDICTED: mRNA-decapping enzyme-like protein-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SJF3|DCP1_ARATH | 2.00E-100 | mRNA-decapping enzyme-like protein |
| trEMBL | tr|A0A072U465|A0A072U465_MEDTR | 4.00E-178 | mRNA-decapping enzyme-like protein {ECO:0000313|EMBL:KEH24156.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 340591 | 344563 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12611 | DCP1B | EC:3.-.-.- | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002829.1 | PF06058.8 | DCP1 | 15 | 135 | 2.30E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.735 |
| SRR1783600 | control | 57.507 |
| SRR1783602 | moderate drought stress | 53.350 |
| SRR1811619 | moderate drought stress | 53.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.121 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.905 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.887 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 33.586 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.052 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.971 |
| SRR2967015 | Control (Tissue:root) | 33.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.800 |
| SRR9715740 | Leave | 21.602 |
| SRR9715741 | Leave | 20.868 |
| SRR9715739 | Root | 13.025 |
| SRR9715742 | Root | 22.427 |
| SRR9715743 | Root | 21.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.787 |
| SRR8749028 | MeJA induced 9h | 36.671 |
| SRR8749029 | MeJA induced 9h | 23.942 |
| SRR8749030 | Uninduced | 7.401 |
| SRR8749031 | Uninduced | 9.093 |
| SRR8749032 | Uninduced | 4.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 32.833 |
| SRR8400027 | Control-Root | 31.125 |