Gene detail information of Glyur000007s00002834.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26640.1 | 3.00E-98 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_007162927.1 | 0 | hypothetical protein PHAVU_001G192200g [Phaseolus vulgaris] |
| COG | YP_001508542.1 | 2.00E-08 | WD-40 repeat-containing protein [Frankia sp. EAN1pec] |
| Swissprot | tr|Q38960|LWD2_ARATH | 9.00E-123 | WD repeat-containing protein LWD2 |
| trEMBL | tr|V7D164|V7D164_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34921.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 383173 | 384306 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002834.1 | PF00400.27 | WD40 | 150 | 181 | 0.0027 |
| Glyur000007s00002834.1 | PF00400.27 | WD40 | 191 | 222 | 0.00013 |
| Glyur000007s00002834.1 | PF00400.27 | WD40 | 275 | 313 | 1.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.306 |
| SRR1783600 | control | 0.259 |
| SRR1783602 | moderate drought stress | 0.858 |
| SRR1811619 | moderate drought stress | 0.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.191 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.024 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.371 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.275 |
| SRR2967015 | Control (Tissue:root) | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.865 |
| SRR9715740 | Leave | 3.031 |
| SRR9715741 | Leave | 9.927 |
| SRR9715739 | Root | 0.875 |
| SRR9715742 | Root | 0.756 |
| SRR9715743 | Root | 0.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.018 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.148 |
| SRR8400027 | Control-Root | 0.137 |