Gene detail information of Glyur000007s00002848.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02310.1 | 9.00E-05 | phloem protein 2-B6 |
| NR | XP_007151204.1 | 1.78E-42 | hypothetical protein PHAVU_004G026700g [Phaseolus vulgaris] |
| trEMBL | tr|V7C1H4|V7C1H4_PHAVU | 7.00E-43 | Uncharacterized protein {ECO:0000313|EMBL:ESW23198.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 457866 | 459136 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002848.1 | PF00646.28 | F-box | 16 | 59 | 1.10E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.032 |
| SRR1783600 | control | 4.453 |
| SRR1783602 | moderate drought stress | 6.390 |
| SRR1811619 | moderate drought stress | 5.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.819 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.511 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.944 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.821 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.512 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.121 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.375 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.054 |
| SRR2967015 | Control (Tissue:root) | 10.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.946 |
| SRR9715740 | Leave | 2.046 |
| SRR9715741 | Leave | 1.554 |
| SRR9715739 | Root | 0.914 |
| SRR9715742 | Root | 1.048 |
| SRR9715743 | Root | 1.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.637 |
| SRR8749028 | MeJA induced 9h | 22.435 |
| SRR8749029 | MeJA induced 9h | 11.390 |
| SRR8749030 | Uninduced | 13.286 |
| SRR8749031 | Uninduced | 5.286 |
| SRR8749032 | Uninduced | 7.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.792 |
| SRR8400027 | Control-Root | 2.603 |