Gene detail information of Glyur000007s00002854.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03940.10chloroplast signal recognition particle 54 kDa subunit
NRXP_003521470.10PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Glycine max]
COGYP_001518435.16.00E-177signal recognition particle protein [Acaryochloris marina MBIC11017]
Swissprottr|P37107|SR54C_ARATH0Signal recognition particle 54 kDa protein, chloroplastic (Precursor)
trEMBLtr|I1JQ35|I1JQ35_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G35470.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00007484254490583+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03106SRP54, ffh EC:3.6.5.4 Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0006614  SRP-dependent cotranslational protein targeting to membrane


cellular_component

GO:0048500  signal recognition particle


molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding

GO:0008312  7S RNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000007s00002854.2PF02881.14SRP54_N741367.80E-15
Glyur000007s00002854.2PF00448.17SRP541543452.90E-74
Glyur000007s00002854.2PF02978.14SRP_SPB3764741.10E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.276
SRR1783600control7.103
SRR1783602moderate drought stress9.150
SRR1811619moderate drought stress8.622

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.166
DRR006520Root Summer glycyrrhizin high producing strain24.423
DRR006521Root Winter glycyrrhizin high producing strain18.477
DRR006522Root Winter glycyrrhizin high producing strain17.477
DRR006523Root Summer glycyrrhizin low producing strain28.231
DRR006524Root Summer glycyrrhizin low producing strain28.353
DRR006525Leaf Summer glycyrrhizin high producing strain78.218
DRR006526Leaf Summer glycyrrhizin high producing strain78.819

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.418
SRR2868004Drought Stress(Tissue:root)15.444
SRR2967015Control (Tissue:root)20.334

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave63.363
SRR9715740Leave110.210
SRR9715741Leave55.674
SRR9715739Root1.605
SRR9715742Root9.223
SRR9715743Root8.649

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.713
SRR8749028MeJA induced 9h11.916
SRR8749029MeJA induced 9h10.733
SRR8749030Uninduced8.801
SRR8749031Uninduced3.526
SRR8749032Uninduced5.912

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.575
SRR8400027Control-Root15.386

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved