Gene detail information of Glyur000007s00002870.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26060.19.00E-142Transducin/WD40 repeat-like superfamily protein
NRXP_004494174.10PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Cicer arietinum]
COGYP_001864889.12.00E-37hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprottr|A8IZG4|CIAO1_CHLRE2.00E-104Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255|HAMAP-Rule:MF_03037}
trEMBLtr|G7L636|G7L636_MEDTR0Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000256|HAMAP-Rule:MF_03037}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00007563848569967+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0016226  iron-sulfur cluster assembly


cellular_component

GO:0097361  CIA complex


molecular_function

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000007s00002870.1PF00400.27WD408501.00E-10
Glyur000007s00002870.1PF00400.27WD4058972.10E-10
Glyur000007s00002870.1PF00400.27WD401041413.60E-11
Glyur000007s00002870.1PF00400.27WD401491858.10E-10
Glyur000007s00002870.1PF00400.27WD402052368.20E-08
Glyur000007s00002870.1PF00400.27WD402612880.016
Glyur000007s00002870.1PF00400.27WD403063414.80E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.210
SRR1783600control15.280
SRR1783602moderate drought stress12.481
SRR1811619moderate drought stress12.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.639
DRR006520Root Summer glycyrrhizin high producing strain29.467
DRR006521Root Winter glycyrrhizin high producing strain30.841
DRR006522Root Winter glycyrrhizin high producing strain29.884
DRR006523Root Summer glycyrrhizin low producing strain36.183
DRR006524Root Summer glycyrrhizin low producing strain36.657
DRR006525Leaf Summer glycyrrhizin high producing strain8.662
DRR006526Leaf Summer glycyrrhizin high producing strain8.640

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.554
SRR2868004Drought Stress(Tissue:root)35.582
SRR2967015Control (Tissue:root)35.294

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.457
SRR9715740Leave13.333
SRR9715741Leave20.323
SRR9715739Root21.328
SRR9715742Root32.920
SRR9715743Root31.386

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.531
SRR8749028MeJA induced 9h16.523
SRR8749029MeJA induced 9h20.486
SRR8749030Uninduced9.454
SRR8749031Uninduced3.381
SRR8749032Uninduced5.216

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.134
SRR8400027Control-Root37.290

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved