Gene detail information of Glyur000007s00002873.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67190.2 | 3.00E-148 | F-box/RNI-like superfamily protein |
| NR | XP_003554432.1 | 0 | PREDICTED: F-box/LRR-repeat protein At1g67190-like [Glycine max] |
| Swissprot | tr|Q9ZW88|FBL34_ARATH | 0 | F-box/LRR-repeat protein At1g67190 |
| trEMBL | tr|I1NAM7|I1NAM7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 585762 | 587021 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002873.1 | PF12937.2 | F-box-like | 2 | 38 | 1.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.412 |
| SRR1783600 | control | 4.354 |
| SRR1783602 | moderate drought stress | 3.960 |
| SRR1811619 | moderate drought stress | 3.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.910 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.130 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.358 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.517 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.623 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.942 |
| SRR2967015 | Control (Tissue:root) | 12.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.252 |
| SRR9715740 | Leave | 5.008 |
| SRR9715741 | Leave | 5.105 |
| SRR9715739 | Root | 6.463 |
| SRR9715742 | Root | 7.570 |
| SRR9715743 | Root | 5.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.585 |
| SRR8749028 | MeJA induced 9h | 6.253 |
| SRR8749029 | MeJA induced 9h | 2.889 |
| SRR8749030 | Uninduced | 2.692 |
| SRR8749031 | Uninduced | 4.173 |
| SRR8749032 | Uninduced | 2.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.510 |
| SRR8400027 | Control-Root | 8.337 |