Gene detail information of Glyur000008s00001255.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19910.1 | 3.00E-65 | SOH1 family protein |
| NR | XP_007143327.1 | 4.72E-130 | hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris] |
| Swissprot | tr|Q8VYB1|MED31_ARATH | 4.00E-86 | Mediator of RNA polymerase II transcription subunit 31 |
| trEMBL | tr|V7BFP0|V7BFP0_PHAVU | 2.00E-130 | Uncharacterized protein {ECO:0000313|EMBL:ESW15321.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 14275 | 17433 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SOH1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001255.1 | PF05669.7 | Med31 | 29 | 128 | 1.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.090 |
| SRR1783600 | control | 11.982 |
| SRR1783602 | moderate drought stress | 11.104 |
| SRR1811619 | moderate drought stress | 11.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.603 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.406 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.808 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.468 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.647 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.122 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.478 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.666 |
| SRR2967015 | Control (Tissue:root) | 8.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.926 |
| SRR9715740 | Leave | 6.890 |
| SRR9715741 | Leave | 7.359 |
| SRR9715739 | Root | 6.444 |
| SRR9715742 | Root | 8.731 |
| SRR9715743 | Root | 8.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.613 |
| SRR8749028 | MeJA induced 9h | 22.022 |
| SRR8749029 | MeJA induced 9h | 20.928 |
| SRR8749030 | Uninduced | 16.582 |
| SRR8749031 | Uninduced | 12.250 |
| SRR8749032 | Uninduced | 8.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.334 |
| SRR8400027 | Control-Root | 10.580 |