Gene detail

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Gene detail information of Glyur000008s00001271.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22830.1	2.00E-102	heat shock transcription factor A6B
NR	XP_003555351.1	0	PREDICTED: heat stress transcription factor A-6b-like [Glycine max]
Swissprot	tr\|Q9LUH8\|HFA6B_ARATH	1.00E-128	Heat stress transcription factor A-6b
trEMBL	tr\|I1NGK0\|I1NGK0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G28870.1}

Sequence

Transcript Sequence

>Glyur000008s00001271.1
ATGAATCCTCATGGTAGAGTGAAGGAGGAGTTTCTGATGGGGGAAAGTTCATCCTTTTGTGGTGGTCATACTCATGAGCAGCAGCCTGCAGTGATGATGAATATTAATGCTCCCCAACCATTGGAGGGGCTTCATGAAACTGGTCCTCCACCATTCCTCACAAAGACATATGACATAGTTGATGATCCTTCCACAGATCACATAGTTTCCTGGAGCAGAGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTCCCCAGATTCTTCAAGCACAACAACTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAGGTGGGAGTTTGCCAATGAAATGTTTCTNAGAGGGCAAAGAATACTCTTGAAGAACATTAGAAGGAGGAAAGCAAATCAATCATCTGTGGCAATGCAGCAAGGTGCTCTAGACCCTTCTAATTGTGTTGAGGTGGGGCGGTTTGGATTAGATGGAGAAGTTGATCGGTTNAGGCGTGACAAACAAGTCTTGATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAGAATACTAGAACTCACCTTCAAGCAATGGAAGGAAGGCTTCAAAGGACTGAGCAGAAACAANAACAGATGATGAATTTCTTGGCAAGGGCAATGCAAAATCCCAATTTCTTGCAACAGTTGGTTCAGCAAAAGGAATGGAGGAAGGAGTTAGAGGAAGCTTTTTCCAAGAAGAGGAGAAGACCTATTGATCAAGGGCCTACTAGCAGTACTGTTGAATTAGTAGGTGATGTCAATGAATTAGGATATGCTGATGAAGAGTGCTCAACTTTTGTTAAGCTTGAACCACAGGAATACAGTACTGATCATGACAAATATTCATTAGAGTTTGAGGACCTTGCTTTNAATATGGAGGGATCACAAAGTGGAAGCCAAAATGTTGATATTGAGGAAGATCACCACATTCAACAACTTGAGAGTAGAGGAGGTAAAGACATTGATGAGGTGTTTTGGCAGGATTTGCTTAATGAGGGTATTCAAGATCAAGATGTATTAGATGTTGAAGATGTAGATGCATTGGCTGAGCAACTTGGTTATTTGGCCTCTAGTACTCCTCCTAAATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	121149	123125	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component GO:0005634 nucleus molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0043565 sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001271.1	PF00447.12	HSF_DNA-bind	52	144	1.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.615
SRR1783600	control	0.595
SRR1783602	moderate drought stress	0.671
SRR1811619	moderate drought stress	0.728

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.760
DRR006520	Root Summer glycyrrhizin high producing strain	0.792
DRR006521	Root Winter glycyrrhizin high producing strain	1.793
DRR006522	Root Winter glycyrrhizin high producing strain	1.476
DRR006523	Root Summer glycyrrhizin low producing strain	3.492
DRR006524	Root Summer glycyrrhizin low producing strain	3.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.691
SRR2868004	Drought Stress(Tissue:root)	0.995
SRR2967015	Control (Tissue:root)	2.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.088
SRR9715740	Leave	0.002
SRR9715741	Leave	0.058
SRR9715739	Root	0.224
SRR9715742	Root	0.744
SRR9715743	Root	0.822

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.320
SRR8749028	MeJA induced 9h	0.969
SRR8749029	MeJA induced 9h	0.293
SRR8749030	Uninduced	0.474
SRR8749031	Uninduced	0.067
SRR8749032	Uninduced	0.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.760
SRR8400027	Control-Root	13.884