Gene detail information of Glyur000008s00001272.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14710.25.00E-94RmlC-like cupins superfamily protein
NRKEH43793.11.30E-1371,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Medicago truncatula]
COGYP_003268639.11.00E-20acireductone dioxygenase [Haliangium ochraceum DSM 14365]
Swissprottr|F6HDT7|MTND2_VITVI2.00E-1241,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255|HAMAP-Rule:MF_03154}
trEMBLtr|A0A072VQU1|A0A072VQU1_MEDTR5.00E-1381,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256|HAMAP-Rule:MF_03154}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008133649136895-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08967mtnD, mtnZ, ADI1 EC:1.13.11.53 1.13.11.54 Cysteine and methionine metabolism map00270


Gene Ontology

biological_process

GO:0019509  L-methionine biosynthetic process from methylthioadenosine

GO:0055114  oxidation-reduction process


molecular_function

GO:0010309  acireductone dioxygenase [iron(II)-requiring] activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001272.1PF03079.9ARD151697.40E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control195.533
SRR1783600control195.151
SRR1783602moderate drought stress274.066
SRR1811619moderate drought stress272.525

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain313.020
DRR006520Root Summer glycyrrhizin high producing strain309.644
DRR006521Root Winter glycyrrhizin high producing strain259.013
DRR006522Root Winter glycyrrhizin high producing strain251.705
DRR006523Root Summer glycyrrhizin low producing strain333.386
DRR006524Root Summer glycyrrhizin low producing strain332.550
DRR006525Leaf Summer glycyrrhizin high producing strain102.859
DRR006526Leaf Summer glycyrrhizin high producing strain102.625

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)170.059
SRR2868004Drought Stress(Tissue:root)168.557
SRR2967015Control (Tissue:root)157.969

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave187.353
SRR9715740Leave251.860
SRR9715741Leave242.249
SRR9715739Root79.242
SRR9715742Root149.655
SRR9715743Root129.669

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h187.558
SRR8749028MeJA induced 9h171.620
SRR8749029MeJA induced 9h241.380
SRR8749030Uninduced276.804
SRR8749031Uninduced228.275
SRR8749032Uninduced298.613

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root187.801
SRR8400027Control-Root147.014

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved