Gene detail information of Glyur000008s00001275.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14720.1 | 1.00E-47 | TIFY domain/Divergent CCT motif family protein |
| NR | XP_004496682.1 | 0 | PREDICTED: protein TIFY 4B-like isoform X5 [Cicer arietinum] |
| Swissprot | tr|Q8GY55|TIF4B_ARATH | 2.00E-67 | Protein TIFY 4B |
| trEMBL | tr|K7N3J5|K7N3J5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 149538 | 155590 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001275.1 | PF06200.9 | tify | 137 | 165 | 1.30E-13 |
| Glyur000008s00001275.1 | PF09425.5 | CCT_2 | 234 | 251 | 2.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.138 |
| SRR1783600 | control | 11.045 |
| SRR1783602 | moderate drought stress | 16.450 |
| SRR1811619 | moderate drought stress | 16.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.960 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.977 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.039 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.120 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.488 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.794 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.632 |
| SRR2967015 | Control (Tissue:root) | 24.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.081 |
| SRR9715740 | Leave | 12.738 |
| SRR9715741 | Leave | 13.490 |
| SRR9715739 | Root | 11.951 |
| SRR9715742 | Root | 21.014 |
| SRR9715743 | Root | 17.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.510 |
| SRR8749028 | MeJA induced 9h | 8.462 |
| SRR8749029 | MeJA induced 9h | 6.509 |
| SRR8749030 | Uninduced | 3.536 |
| SRR8749031 | Uninduced | 1.333 |
| SRR8749032 | Uninduced | 2.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.740 |
| SRR8400027 | Control-Root | 30.056 |