Gene detail information of Glyur000008s00001280.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G15580.11.00E-13RING/U-box superfamily protein
NRKEH43812.18.31E-83zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]
Swissprottr|P0CH30|RING1_GOSHI6.00E-11E3 ubiquitin-protein ligase RING1
trEMBLtr|A0A072VPT0|A0A072VPT0_MEDTR3.00E-83Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH43812.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008203061204940-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001280.1PF13639.1zf-RING_21241661.20E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.927
SRR1783600control33.912
SRR1783602moderate drought stress30.055
SRR1811619moderate drought stress30.257

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.642
DRR006520Root Summer glycyrrhizin high producing strain39.898
DRR006521Root Winter glycyrrhizin high producing strain18.347
DRR006522Root Winter glycyrrhizin high producing strain17.684
DRR006523Root Summer glycyrrhizin low producing strain15.905
DRR006524Root Summer glycyrrhizin low producing strain15.824
DRR006525Leaf Summer glycyrrhizin high producing strain22.950
DRR006526Leaf Summer glycyrrhizin high producing strain22.879

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.019
SRR2868004Drought Stress(Tissue:root)3.824
SRR2967015Control (Tissue:root)2.123

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.801
SRR9715740Leave43.225
SRR9715741Leave32.820
SRR9715739Root19.812
SRR9715742Root13.615
SRR9715743Root15.543

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.445
SRR8749028MeJA induced 9h3.418
SRR8749029MeJA induced 9h4.535
SRR8749030Uninduced0.453
SRR8749031Uninduced0.000
SRR8749032Uninduced0.653

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.495
SRR8400027Control-Root19.752

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved