Gene detail information of Glyur000008s00001330.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14920.10Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
NRXP_004496730.10PREDICTED: uncharacterized protein LOC101490910 isoform X4 [Cicer arietinum]
Swissprottr|F4KBP5|CHR4_ARATH1.00E-09Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A072VQ30|A0A072VQ30_MEDTR0RING/FYVE/PHD zinc finger protein, putative {ECO:0000313|EMBL:KEH43887.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008469418477539-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001330.1PF00628.24PHD7097511.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.382
SRR1783600control10.514
SRR1783602moderate drought stress11.149
SRR1811619moderate drought stress11.001

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.153
DRR006520Root Summer glycyrrhizin high producing strain12.045
DRR006521Root Winter glycyrrhizin high producing strain8.851
DRR006522Root Winter glycyrrhizin high producing strain8.743
DRR006523Root Summer glycyrrhizin low producing strain12.167
DRR006524Root Summer glycyrrhizin low producing strain11.844
DRR006525Leaf Summer glycyrrhizin high producing strain6.372
DRR006526Leaf Summer glycyrrhizin high producing strain6.270

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.465
SRR2868004Drought Stress(Tissue:root)30.782
SRR2967015Control (Tissue:root)31.242

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.338
SRR9715740Leave9.460
SRR9715741Leave10.998
SRR9715739Root2.849
SRR9715742Root18.200
SRR9715743Root15.628

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.610
SRR8749028MeJA induced 9h26.997
SRR8749029MeJA induced 9h11.272
SRR8749030Uninduced8.162
SRR8749031Uninduced12.803
SRR8749032Uninduced8.241

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.176
SRR8400027Control-Root27.960

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved