Gene detail

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Gene detail information of Glyur000008s00001338.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14940.1	0	amine oxidase 1
NR	XP_004496741.1	0	PREDICTED: primary amine oxidase-like [Cicer arietinum]
COG	YP_005086886.1	2.00E-106	tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|P49252\|AMO_LENCU	0	Primary amine oxidase (Precursor; Fragment)
trEMBL	tr\|V7BBP8\|V7BBP8_PHAVU	0	Amine oxidase {ECO:0000256\|RuleBase:RU000672}

Sequence

Transcript Sequence

>Glyur000008s00001338.1
ATGATCAGATCAAGTTTTGATAAAGCAGCACCCATGAATATGATTGCTCAATGTCTAGTTCTGCTAGCCTTTTCTCTGAGATTCAGCTTCATTAATAGTTTGCCTCACCCTTTAGACCCTCTCTCACCTTCTGAAATCAACAAAACAAGACACATAGTTCAAGAGTTTTTTCACCTTGGTGCTATTCCTAATACTAACCTGACCTATCATTTTGTGGATGTAGAAGAACCAGACAAAAAGAATGTCCTAAAGTGGTTATTATCTTCAAAAAATACAAANGAAAAGCCTATTACTATTATTCCTCGTCAAGCCAAGGTAGTTGTTAGAGCCAAGGGTGAGACCCACGAGCTTGTAGTGGACTTAACCAAAGGGTCCATTATATCAGATAAAATCTACACAGGCAATGGATACCCTCCTTTGACATTCAATGAGCTCTTTCAAGCAAGCAAATTGCCTCTCAAATACCCAAAATTCAAAGAGTCAATAACCAAGAGGGGCTTGAATTTGTCTGAAGTTTCTTGTGTCCCATTCACAATTGGTTGGTATGGAGAAGAACAAGTCACAAGGAGGGAACTCAAAGTGGCNTGCTTCTATAGAGGAGGATCAGTTAATGTGTGGGCAAGGCCTATTGAGGGAATCACAGTGNTAGTTGATGTTGATTCAATGAAGATTACTATGTATAGTGATAGGTACATGGCCCCTATGCCTAAAGCTGAAGGTACAGATTATGAAACTTCAAGCAGAAAAAGGCCTAAAATTTCTGCTTCCTGTAACATATCAGATATTGGGTTCAGCATCAAAGGCCATGAGGTCAAATGGGGTAACTGGGTTTTCCATGTTGGGTTCAATGCTCGGGCAGGGATGATTATATCAACTGCTTCAATATTTGATGCTAGAAAACACAAGTNTAGGAGAGTGATGTATAGGGGTCATGTGTCTGAGACATTTGTTCCTTACATGGATCCTACAATGGAGTGGTATTTCAGGACTTTCATGGATGCTGGGGAATTTGGGTTTGGGCGTGCAGCTGATAGCTTGCAACCTGGTGTTGATTGCCCTGACAATGCAGTGTATATGGATGGCTATATGGCTGGTCCTGATGGAGAGGTGCAACAGGTGCCAAGGGCTATTTGCATTTTTGAGAGGGATTCTGGCAATGTGGCTTGGAGGCACATGGAAATCAACAACCCCAAAAGATTGATAAGAAATGGAGANCCTGATGTTACTTTGGTGGTCAGAATGATTGCTACTGTGGGTAACTACGATTATGTTCTTGACTGGGAATTCCTGAGAAGTGGCAGCATAAAAGTTGGGGTGGCTCTGACAGGTGTATTGGAGATGAAAGCAGTGCCATATACACACAAGAGTCAAATAAAAGAAAGAGTATTTGGAACCTTGGTGGCAGAAAACACCATAGCCAATAATCATGATCACTACATAACATACTANCTTGACCTTGACATTGATGATAGTGGCAACTCTTTCATCAATGCCAAGATACAAAAGGCCACATCAAGTAGTGGCTGTGGAACACCAAGGAAGAGTTACTGGACGGTTGTTAGNGAAGCCGCCAAGAGGGAAGCCGAGGGTAGGATTCGGCTCGGCTTGGAGCCAGCTGAGCTGTTGATAGTCAACCCCAATAAGAGGACAAAGGTAGGGAATCAAGTGGGTTACCGGCTGATCAGTGGACAGCCGGTTACTTCCCTCATGTCTGATGATGATTACCCACAGAGAAGAGCATCTTACACAAAGTATCAGGTGTGGGTCACCCCCTATAACAAGTCAGAGAGATGGGCTGTGGGTCATGGTTCATGCAGAAACAGAGAGATCGAGAATACAGACATAGTGCTATGGCACACAATTGGGATCCATCACATTCCTTATCAAGAAGATTTTCCAGNAATGCCAGCAGTTCAGGGTGGATTTGAACTGAGGCCAGCTAACTTTTTCGAAAACAGTCCATTACTTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	528752	531735	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0005507 copper ion binding GO:0008131 primary amine oxidase activity GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001338.1	PF02727.11	Cu_amine_oxidN2	36	131	5.10E-21
Glyur000008s00001338.1	PF02728.11	Cu_amine_oxidN3	138	232	6.80E-28
Glyur000008s00001338.1	PF01179.15	Cu_amine_oxid	264	655	1.10E-121

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.019
SRR1783600	control	0.019
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.160
DRR006520	Root Summer glycyrrhizin high producing strain	0.116
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.068
DRR006524	Root Summer glycyrrhizin low producing strain	1.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.901
SRR2868004	Drought Stress(Tissue:root)	2.049
SRR2967015	Control (Tissue:root)	1.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.082
SRR9715740	Leave	0.000
SRR9715741	Leave	0.002
SRR9715739	Root	0.000
SRR9715742	Root	0.063
SRR9715743	Root	0.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.001
SRR8749029	MeJA induced 9h	0.062
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.172
SRR8400027	Control-Root	0.422