Gene detail

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Gene detail information of Glyur000008s00001339.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60900.1	2.00E-103	receptor-like protein kinase 1
NR	XP_003592403.1	0	Primary amine oxidase [Medicago truncatula]
COG	YP_003311814.1	2.00E-21	serine/threonine protein kinase with PASTA sensor(s) [Veillonella parvula DSM 2008]
Swissprot	tr\|Q39202\|RLK1_ARATH	5.00E-135	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (Precursor)
trEMBL	tr\|A0A067KVJ5\|A0A067KVJ5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40162.1}

Sequence

Transcript Sequence

>Glyur000008s00001339.1
CCGCGAACTGAGCCCAAACCGCACCAAAAATAACCGAACTGTTGAAATAGTTCGGGAACCGATACATTTTATAAAACACAGTTCAGTTAACTAAAACATTTTTAAAACAATATTCAGTGAACTTGCGAACTGTGAACTGGTTTTCAATCCCTCNGAGCTCTTTATCTCTCTTTTGCCAATTGCGATTTTGCTTCTTCTATTCATCCACAAGCATCGAACATCAAAGTCTTGAAGGAAACCTAATCCCCAAATCATGAATCGTGAGTCTATGAAGTGTGAATTGTGAACCTATCGAACAGTGAAGAACTCTAATCCCCAAATCGTGATTTTTCTTCTCGTTTTTCGCCACGAAACTCTCGTTCTTCGTAGCAAACCCATCAAATGTTGCTATTTTTGGGTGTTGTGCGTTCTTCCAATCTACACAATCCCAGTGGNCAGTATCTTGTTGGAATTTGGTTTGATAAGATTCCACAGAAAACGTTGGTTTGGTCTGCAAACCGTGANGATCCGGCTCAGATTGGCTCAACCATCAATCTTACAATGAGAGGCCAATTTGTGCTGCAACATGCAAACAAGACTTCATTTCTAATCTACAATGGTACNAGTGCAACTTCTGCTATGATGCAGGATAATGGGAATTTCATCTTGATGAACTCTTTTTCAAACATCATCTGGCAGAGCTTTGATTCACCAACAGATACTATTCTNCCGGGCCAAACTCTGAATATGGGTCAGATGCTATTTTCCAATGCCAAGGGAACAGAAGACTACTCAACTGGGCAATACAAGTTGGAGGTTCAAAAAGACGATGGCAACATTCTTATGTTTGCTTTTNGGTATGAGGGTCTTGCATACTGGTACACTTTTACTACTTCTTATACAAGTGTAAGACTTGTCTTTAACAACATAACAACTTTTCTTTATGCTGTCAATGGCACACACAACATATTTAACATGACAACAGAAGTNCCCAACCCAGTTGAGAAGTACTACCATCGAGCAACGATCAACGACCATGGAAATTTTCAGCAGCTGATTTACCTTAAAGAAGGTGGAAACAACTGGACAGTTATATGGCAGGCCATAACACAGCCCTGCACGGTGAATGCCATTTGTGGGGTGTATGGCTTTTGCACCTCACCCGATAACAATACAATCAACTGTGGTTGTTTGCCTGGATACANACCTTTTGATCCAAGTGTGCCCTCCAAAGGGTGTTATCCCAGTGTGGCCATGGATTTCTGTGCTNCAAATTCCTCTACATCAGACTATACAGTGGAGGAAATTCAAAATGCTGATATAGCAAACGATATGTTTATCGATCTACAAAGAATAGACTCGTCTNATTTGGACAGTTGTAGGAAGGAAGTGATGAATGACTGCTTCTGCATGGCTGGTGTTTTGATTGACTCCGTTTGTTACAAGAAAAAGACGCCTCTTTTAAATGCCAGAATAAGCATACCTGCCACTAGCAATAGAGTGGCACTGATCAAAGTTCCTAGTCAGGCTCACCAAGAGGATAAAAATCATTCACCTTCTCGGGTTGGTTTGCTAGTAGCCCTCTCAGTGTGCTCCTTACTTGCTGTTGTCTTTGCAACTATTGCTATCTATTATCACCCAACATTTCGCCATCTCATGAAGAAAGAGGCAGCCCCAAAGCCAAAGCCTGTGGACATCAATCTAAAGGCATTTTCATTCCAAGACTTGAGAGAAGCAACAAATGGATTCAGGAACAAACTTGGCCATGGAGCTTTTGGCACGGTCTATAGTGGGGTTTTGACTTTGGAGGGTGAACAGGTTGAGGTTGCTGTGAAGCAACTGGAAAAGGTAGAGGAAAAGGGTGAAAAAGAATTTGTCAATGAAGTTCAAGTAATTGGTATGACTCATCACAAGACCCTTGTAAGGTTATTGGGTTTCTGCAACAAGCAGAATCATCGTCTTCTGGTTTATGAAATGGTGAGAAATGGGACATTGTCCAATTTCTTTTTTAGGGAGGGGGATAAACCCAGTTGGGATCATAGAGCCAAAATTGTTCTTGAAATTGCTGGAGGCTTGAGGTACCTGCATGAAGAGTGTGACCCCCAGATCATCCACTGTGACATTAAGCCACAAAATGTTCTTCTTGACTCAAATTATACTGCAAAAATTGCAGATTTTGGAATGGCAAAGCTATTAATGAAAGACAGAACTCNAACAAGCACAAATGTAAGAGGGACAATGGGATATTTGGCACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAGTGGATGTCTACAGCTTTGGTGTCATGTTGCTGGAAATCTTATTTTGCAGAAGGCACATTGAGTTGCATCAAATTGACGATGGAACAGAAGGTGGNGATGACATGATACTTATAGATTGGGTTCTGTATTGGGTAAAAGAGGGGAATCTAAGAGACATCGTGAACCATGATCTTGAAGTTGCTAATGATTTCAAGAGGTTTGAGAGAATGACAATGGTTGGGTTGTGGTGCCTNTGTCCTAACCCAACTCATAGGCCATCTATTGCAAAGGTGATACAGATGTTGGAAGGAGATACAGAAGTTGGTGTTCCACCACTGTTTGATGGGCAAATGTTGTAACCAAATTTTGTCCTTAATTTTTTGTTTTATTCGATACTAGTATCAATATATAATCTTCTTGATGTTGTGTGATTAGTGATTACCTCGGACTTGAGCTCTGATTCATCAAGTTAGATCAGTTAGAATTTGTTCCTCGAGTTGTAAATTCATGATGAATGCTCCCCACCCCTTTTCAATGATACAATCAATCACTAATTAAAGTTAAATTGATACTGTTTTACTGACTTAATCAGAGTAAATTGCTATTATTAAAGTTCGTCGCAAACCAGAGACAACCACACCCTGTGAAATAACAAACAGGACCGGTGTGAAACTTGCTGTCAGGAGATAAGTTGCTGCAGTACACCAAACCAGAGACAACCACACCCAGTGAATAACGCCACACCGTGGGTGTACAACTGCCAGTAGCAGACTCGATCTCCACCACCCCAGATCAGAAAAGACCACAGCTGTGAAATATGTCACACCATAGGTGTGATACTTACTGCCATAAAAAATGGAAAGCTGTAGTTTCCTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	538404	543006	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001339.1	PF01453.19	B_lectin	32	118	1.40E-17
Glyur000008s00001339.1	PF00954.15	S_locus_glycop	200	269	9.70E-10
Glyur000008s00001339.1	PF00069.20	Pkinase	451	722	2.10E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.249
SRR1783600	control	2.238
SRR1783602	moderate drought stress	4.406
SRR1811619	moderate drought stress	4.483

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.511
DRR006520	Root Summer glycyrrhizin high producing strain	4.369
DRR006521	Root Winter glycyrrhizin high producing strain	6.928
DRR006522	Root Winter glycyrrhizin high producing strain	6.693
DRR006523	Root Summer glycyrrhizin low producing strain	4.492
DRR006524	Root Summer glycyrrhizin low producing strain	4.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.983

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.354
SRR2868004	Drought Stress(Tissue:root)	9.911
SRR2967015	Control (Tissue:root)	10.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.169
SRR9715740	Leave	4.630
SRR9715741	Leave	8.929
SRR9715739	Root	0.597
SRR9715742	Root	4.133
SRR9715743	Root	3.620

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.187
SRR8749028	MeJA induced 9h	10.424
SRR8749029	MeJA induced 9h	4.140
SRR8749030	Uninduced	77.412
SRR8749031	Uninduced	13.043
SRR8749032	Uninduced	6.475

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.229
SRR8400027	Control-Root	2.654