Gene detail information of Glyur000008s00001340.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G31690.10Copper amine oxidase family protein
NRXP_003592404.10Primary amine oxidase [Medicago truncatula]
COGYP_005086886.14.00E-111tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprottr|Q43077|AMO_PEA0Primary amine oxidase (Precursor)
trEMBLtr|G7ID65|G7ID65_MEDTR0Amine oxidase {ECO:0000256|RuleBase:RU000672}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008543155548373-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00276AOC3, AOC2, tynA EC:1.4.3.21 Glycine, serine and threonine metabolism map00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0009308  amine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005507  copper ion binding

GO:0008131  primary amine oxidase activity

GO:0048038  quinone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001340.1PF02727.11Cu_amine_oxidN2351327.50E-16
Glyur000008s00001340.1PF02728.11Cu_amine_oxidN31412371.80E-23
Glyur000008s00001340.1PF01179.15Cu_amine_oxid2616562.70E-124


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.754
SRR1783600control0.688
SRR1783602moderate drought stress2.113
SRR1811619moderate drought stress2.260

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.852
DRR006520Root Summer glycyrrhizin high producing strain0.865
DRR006521Root Winter glycyrrhizin high producing strain0.515
DRR006522Root Winter glycyrrhizin high producing strain0.436
DRR006523Root Summer glycyrrhizin low producing strain1.627
DRR006524Root Summer glycyrrhizin low producing strain1.574
DRR006525Leaf Summer glycyrrhizin high producing strain5.548
DRR006526Leaf Summer glycyrrhizin high producing strain5.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.808
SRR2868004Drought Stress(Tissue:root)2.966
SRR2967015Control (Tissue:root)2.938

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.994
SRR9715740Leave9.369
SRR9715741Leave6.739
SRR9715739Root0.221
SRR9715742Root1.122
SRR9715743Root1.184

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.699
SRR8749028MeJA induced 9h0.317
SRR8749029MeJA induced 9h0.530
SRR8749030Uninduced0.331
SRR8749031Uninduced0.033
SRR8749032Uninduced0.146

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.127
SRR8400027Control-Root4.161

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved