Gene detail information of Glyur000008s00001346.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.10PLAT/LH2 domain-containing lipoxygenase family protein
NRXP_003592410.10Lipoxygenase [Medicago truncatula]
Swissprottr|Q9LUW0|LOX5_ARATH0Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBLtr|G7ID71|G7ID71_MEDTR0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008564515582938-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001346.1PF01477.18PLAT581516.70E-20
Glyur000008s00001346.1PF00305.14Lipoxygenase1628351.1e-312


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control72.208
SRR1783600control72.298
SRR1783602moderate drought stress64.072
SRR1811619moderate drought stress63.520

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.835
DRR006520Root Summer glycyrrhizin high producing strain18.130
DRR006521Root Winter glycyrrhizin high producing strain0.188
DRR006522Root Winter glycyrrhizin high producing strain0.187
DRR006523Root Summer glycyrrhizin low producing strain3.638
DRR006524Root Summer glycyrrhizin low producing strain3.808
DRR006525Leaf Summer glycyrrhizin high producing strain20.263
DRR006526Leaf Summer glycyrrhizin high producing strain20.224

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)114.671
SRR2868004Drought Stress(Tissue:root)114.760
SRR2967015Control (Tissue:root)98.171

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave51.880
SRR9715740Leave38.219
SRR9715741Leave66.216
SRR9715739Root12.472
SRR9715742Root73.785
SRR9715743Root56.802

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.138
SRR8749028MeJA induced 9h0.194
SRR8749029MeJA induced 9h0.211
SRR8749030Uninduced0.136
SRR8749031Uninduced0.214
SRR8749032Uninduced0.231

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.969
SRR8400027Control-Root96.667

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved