Gene detail information of Glyur000008s00001347.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.12.00E-65PLAT/LH2 domain-containing lipoxygenase family protein
NRXP_003592410.11.66E-114Lipoxygenase [Medicago truncatula]
Swissprottr|Q43191|LOX15_SOLTU6.00E-80Probable linoleate 9S-lipoxygenase 5
trEMBLtr|G7ID71|G7ID71_MEDTR6.00E-115Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008580309581403+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001347.1PF01477.18PLAT2947.90E-21
Glyur000008s00001347.1PF00305.14Lipoxygenase1051841.70E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.544
SRR1783600control32.957
SRR1783602moderate drought stress30.061
SRR1811619moderate drought stress31.650

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.173
DRR006520Root Summer glycyrrhizin high producing strain5.778
DRR006521Root Winter glycyrrhizin high producing strain0.093
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.092
DRR006524Root Summer glycyrrhizin low producing strain0.745
DRR006525Leaf Summer glycyrrhizin high producing strain7.442
DRR006526Leaf Summer glycyrrhizin high producing strain8.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.014
SRR2868004Drought Stress(Tissue:root)30.965
SRR2967015Control (Tissue:root)24.869

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.970
SRR9715740Leave5.049
SRR9715741Leave10.989
SRR9715739Root1.873
SRR9715742Root11.974
SRR9715743Root13.877

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.060
SRR8749028MeJA induced 9h0.033
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.029
SRR8749031Uninduced0.085
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.222
SRR8400027Control-Root20.822

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved