Gene detail information of Glyur000008s00001355.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05970.10long-chain acyl-CoA synthetase 6
NRXP_004496750.10PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like isoform X1 [Cicer arietinum]
COGYP_005846047.14.00E-89Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
Swissprottr|Q8LPS1|LACS6_ARATH0Long chain acyl-CoA synthetase 6, peroxisomal (Precursor)
trEMBLtr|V7BE91|V7BE91_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15223.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008644790654331-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001355.1PF00501.23AMP-binding1102731.00E-28
Glyur000008s00001355.1PF00501.23AMP-binding2925692.00E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.441
SRR1783600control25.404
SRR1783602moderate drought stress25.505
SRR1811619moderate drought stress25.042

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.475
DRR006520Root Summer glycyrrhizin high producing strain20.234
DRR006521Root Winter glycyrrhizin high producing strain13.540
DRR006522Root Winter glycyrrhizin high producing strain13.312
DRR006523Root Summer glycyrrhizin low producing strain20.132
DRR006524Root Summer glycyrrhizin low producing strain20.255
DRR006525Leaf Summer glycyrrhizin high producing strain54.924
DRR006526Leaf Summer glycyrrhizin high producing strain54.539

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.101
SRR2868004Drought Stress(Tissue:root)60.025
SRR2967015Control (Tissue:root)62.132

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave72.312
SRR9715740Leave109.637
SRR9715741Leave74.886
SRR9715739Root6.683
SRR9715742Root15.725
SRR9715743Root14.348

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.713
SRR8749028MeJA induced 9h78.898
SRR8749029MeJA induced 9h66.267
SRR8749030Uninduced105.546
SRR8749031Uninduced117.592
SRR8749032Uninduced86.561

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.282
SRR8400027Control-Root42.753

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved