Gene detail information of Glyur000008s00001368.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G19330.10ARM repeat protein interacting with ABF2
NRXP_004496757.10PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Cicer arietinum]
COGYP_006545503.11.00E-05heat repeat-containing PBS lyase [Methanoculleus bourgensis MS2]
Swissprottr|B9DHT4|ARIA_ARATH0ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBLtr|V7BE87|V7BE87_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15218.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008727474734965+


Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF
Ubiquitin FamilyBTB
Ubiquitin Family3-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001368.1PF00514.18Arm2042373.20E-07
Glyur000008s00001368.1PF00514.18Arm2402791.80E-07
Glyur000008s00001368.1PF00514.18Arm3243630.00013
Glyur000008s00001368.1PF00651.26BTB5456471.10E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.513
SRR1783600control15.519
SRR1783602moderate drought stress26.961
SRR1811619moderate drought stress26.818

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.351
DRR006520Root Summer glycyrrhizin high producing strain19.091
DRR006521Root Winter glycyrrhizin high producing strain42.512
DRR006522Root Winter glycyrrhizin high producing strain41.356
DRR006523Root Summer glycyrrhizin low producing strain22.761
DRR006524Root Summer glycyrrhizin low producing strain22.902
DRR006525Leaf Summer glycyrrhizin high producing strain12.139
DRR006526Leaf Summer glycyrrhizin high producing strain12.030

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.241
SRR2868004Drought Stress(Tissue:root)31.309
SRR2967015Control (Tissue:root)30.317

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.985
SRR9715740Leave21.499
SRR9715741Leave26.127
SRR9715739Root23.854
SRR9715742Root32.517
SRR9715743Root30.189

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.567
SRR8749028MeJA induced 9h30.255
SRR8749029MeJA induced 9h22.803
SRR8749030Uninduced27.339
SRR8749031Uninduced29.335
SRR8749032Uninduced31.913

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.025
SRR8400027Control-Root43.902

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved