Gene detail

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Gene detail information of Glyur000009s00001390.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03280.1	3.00E-81	photosynthetic electron transfer C
NR	KHN04299.1	8.31E-134	Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Glycine soja]
COG	YP_007114877.1	1.00E-85	Cytochrome b6-f complex iron-sulfur subunit [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|P26291\|UCRIA_PEA	1.00E-118	Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (Precursor)
trEMBL	tr\|I1LUB3\|I1LUB3_SOYBN	3.00E-134	Cytochrome b6-f complex iron-sulfur subunit {ECO:0000256\|RuleBase:RU004496}

Sequence

Transcript Sequence

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	94066	96778	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02636	petC	EC:1.10.9.1	Photosynthesis	map00195

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0055114 oxidation-reduction process

cellular_component GO:0016020 membrane GO:0042651 thylakoid membrane molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity GO:0009496 plastoquinol--plastocyanin reductase activity GO:0016491 oxidoreductase activity GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity GO:0051537 2 iron, 2 sulfur cluster binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001390.1	PF08802.5	CytB6-F_Fe-S	28	66	1.30E-20
Glyur000009s00001390.1	PF00355.21	Rieske	108	170	1.80E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.734
SRR1783600	control	0.713
SRR1783602	moderate drought stress	3.827
SRR1811619	moderate drought stress	3.729

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.223
DRR006520	Root Summer glycyrrhizin high producing strain	0.221
DRR006521	Root Winter glycyrrhizin high producing strain	0.459
DRR006522	Root Winter glycyrrhizin high producing strain	0.447
DRR006523	Root Summer glycyrrhizin low producing strain	0.506
DRR006524	Root Summer glycyrrhizin low producing strain	0.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	986.229
DRR006526	Leaf Summer glycyrrhizin high producing strain	983.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	61.844
SRR2868004	Drought Stress(Tissue:root)	104.173
SRR2967015	Control (Tissue:root)	85.178

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1339.556
SRR9715740	Leave	1491.802
SRR9715741	Leave	1217.233
SRR9715739	Root	11.002
SRR9715742	Root	9.473
SRR9715743	Root	9.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.804
SRR8749028	MeJA induced 9h	72.657
SRR8749029	MeJA induced 9h	35.748
SRR8749030	Uninduced	30.931
SRR8749031	Uninduced	9.186
SRR8749032	Uninduced	80.376

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.260
SRR8400027	Control-Root	20.339