Gene detail information of Glyur000009s00001408.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12470.10zinc ion binding
NRXP_003543356.10PREDICTED: vacuolar protein sorting-associated protein 18 homolog isoform X1 [Glycine max]
trEMBLtr|K7M2S2|K7M2S2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G37690.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009193698204143-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001408.1PF05131.9Pep3_Vps182473971.70E-38
Glyur000009s00001408.1PF00637.15Clathrin6017392.80E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.169
SRR1783600control11.297
SRR1783602moderate drought stress10.843
SRR1811619moderate drought stress10.771

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.609
DRR006520Root Summer glycyrrhizin high producing strain15.438
DRR006521Root Winter glycyrrhizin high producing strain10.049
DRR006522Root Winter glycyrrhizin high producing strain9.686
DRR006523Root Summer glycyrrhizin low producing strain16.739
DRR006524Root Summer glycyrrhizin low producing strain16.683
DRR006525Leaf Summer glycyrrhizin high producing strain8.122
DRR006526Leaf Summer glycyrrhizin high producing strain8.222

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.073
SRR2868004Drought Stress(Tissue:root)29.929
SRR2967015Control (Tissue:root)29.195

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.588
SRR9715740Leave9.886
SRR9715741Leave11.414
SRR9715739Root2.592
SRR9715742Root13.396
SRR9715743Root9.708

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.320
SRR8749028MeJA induced 9h14.130
SRR8749029MeJA induced 9h5.714
SRR8749030Uninduced7.428
SRR8749031Uninduced4.194
SRR8749032Uninduced4.128

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.100
SRR8400027Control-Root24.870

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved