Gene detail information of Glyur000009s00001425.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20860.17.00E-170lipoic acid synthase 1
NRXP_007149469.10hypothetical protein PHAVU_005G072800g [Phaseolus vulgaris]
COGYP_002492509.18.00E-116lipoyl synthase [Anaeromyxobacter dehalogenans 2CP-1]
Swissprottr|B7FM45|LIAS_MEDTR0Lipoyl synthase, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03128} (Precursor)
trEMBLtr|V7BWP4|V7BWP4_PHAVU0Lipoyl synthase, mitochondrial {ECO:0000256|HAMAP-Rule:MF_03128}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009302995306309+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03644lipA EC:2.8.1.8 Lipoic acid metabolism map00785


Gene Ontology

biological_process

GO:0009107  lipoate biosynthetic process


cellular_component

GO:0005739  mitochondrion


molecular_function

GO:0003824  catalytic activity

GO:0016992  lipoate synthase activity

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001425.1PF04055.16Radical_SAM1403021.60E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.737
SRR1783600control26.695
SRR1783602moderate drought stress21.203
SRR1811619moderate drought stress21.478

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.244
DRR006520Root Summer glycyrrhizin high producing strain17.160
DRR006521Root Winter glycyrrhizin high producing strain13.064
DRR006522Root Winter glycyrrhizin high producing strain13.326
DRR006523Root Summer glycyrrhizin low producing strain20.520
DRR006524Root Summer glycyrrhizin low producing strain20.422
DRR006525Leaf Summer glycyrrhizin high producing strain42.264
DRR006526Leaf Summer glycyrrhizin high producing strain42.512

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.011
SRR2868004Drought Stress(Tissue:root)31.549
SRR2967015Control (Tissue:root)31.293

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.190
SRR9715740Leave26.317
SRR9715741Leave24.886
SRR9715739Root21.063
SRR9715742Root16.831
SRR9715743Root17.509

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.527
SRR8749028MeJA induced 9h37.098
SRR8749029MeJA induced 9h33.017
SRR8749030Uninduced41.937
SRR8749031Uninduced36.641
SRR8749032Uninduced20.622

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.025
SRR8400027Control-Root29.822

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved