Gene detail information of Glyur000009s00001457.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G03510.21.00E-36RING membrane-anchor 1
NRKEH39118.17.76E-104E3 ubiquitin-protein ligase RMA1H1-like protein [Medicago truncatula]
Swissprottr|Q6R567|RMA1_CAPAN4.00E-53E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|A0A072VCD2|A0A072VCD2_MEDTR3.00E-104E3 ubiquitin-protein ligase RMA1H1-like protein {ECO:0000313|EMBL:KEH39118.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009434520435211-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001457.1PF13923.1zf-C3HC4_246943.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.104
SRR1783600control64.994
SRR1783602moderate drought stress75.474
SRR1811619moderate drought stress75.341

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain143.675
DRR006520Root Summer glycyrrhizin high producing strain140.963
DRR006521Root Winter glycyrrhizin high producing strain143.441
DRR006522Root Winter glycyrrhizin high producing strain139.392
DRR006523Root Summer glycyrrhizin low producing strain72.969
DRR006524Root Summer glycyrrhizin low producing strain72.635
DRR006525Leaf Summer glycyrrhizin high producing strain52.343
DRR006526Leaf Summer glycyrrhizin high producing strain52.670

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.568
SRR2868004Drought Stress(Tissue:root)38.716
SRR2967015Control (Tissue:root)58.177

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave61.606
SRR9715740Leave60.527
SRR9715741Leave89.360
SRR9715739Root50.072
SRR9715742Root76.415
SRR9715743Root72.609

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h167.115
SRR8749028MeJA induced 9h503.934
SRR8749029MeJA induced 9h634.307
SRR8749030Uninduced228.521
SRR8749031Uninduced558.380
SRR8749032Uninduced600.052

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.287
SRR8400027Control-Root66.153

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved