Gene detail information of Glyur000009s00001465.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03550.1 | 0 | glucan synthase-like 5 |
| NR | XP_004487377.1 | 0 | PREDICTED: callose synthase 12-like [Cicer arietinum] |
| Swissprot | tr|Q9ZT82|CALSC_ARATH | 0 | Callose synthase 12 |
| trEMBL | tr|A0A072VLU6|A0A072VLU6_MEDTR | 0 | 1,3-beta-glucan synthase component-like protein {ECO:0000313|EMBL:KEH39135.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 471986 | 479638 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001465.1 | PF14288.1 | FKS1_dom1 | 148 | 258 | 1.00E-38 |
| Glyur000009s00001465.1 | PF02364.10 | Glucan_synthase | 855 | 1153 | 3.90E-97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.114 |
| SRR1783600 | control | 0.106 |
| SRR1783602 | moderate drought stress | 0.033 |
| SRR1811619 | moderate drought stress | 0.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.451 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.161 |
| SRR2967015 | Control (Tissue:root) | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.038 |
| SRR9715740 | Leave | 0.036 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.036 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.139 |
| SRR8749028 | MeJA induced 9h | 0.261 |
| SRR8749029 | MeJA induced 9h | 0.022 |
| SRR8749030 | Uninduced | 0.022 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.182 |
| SRR8400027 | Control-Root | 0.180 |