Gene detail information of Glyur000009s00001469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20680.19.00E-166Glycosyl hydrolase superfamily protein
NRXP_006594850.10PREDICTED: mannan endo-1,4-beta-mannosidase 2-like [Glycine max]
COGYP_003324408.15.00E-66glycoside hydrolase family protein [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|Q7Y223|MAN2_ARATH0Mannan endo-1,4-beta-mannosidase 2 (Precursor)
trEMBLtr|I1M3S5|I1M3S5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G37250.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009521908526725-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K19355MAN EC:3.2.1.78 Fructose and mannose metabolism map00051


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001469.1PF00150.13Cellulase773771.10E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.577
SRR1783600control8.496
SRR1783602moderate drought stress6.554
SRR1811619moderate drought stress6.469

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.263
DRR006520Root Summer glycyrrhizin high producing strain11.865
DRR006521Root Winter glycyrrhizin high producing strain2.615
DRR006522Root Winter glycyrrhizin high producing strain2.722
DRR006523Root Summer glycyrrhizin low producing strain14.416
DRR006524Root Summer glycyrrhizin low producing strain14.220
DRR006525Leaf Summer glycyrrhizin high producing strain8.816
DRR006526Leaf Summer glycyrrhizin high producing strain8.564

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.442
SRR2868004Drought Stress(Tissue:root)9.358
SRR2967015Control (Tissue:root)10.963

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.092
SRR9715740Leave18.104
SRR9715741Leave11.371
SRR9715739Root3.281
SRR9715742Root10.941
SRR9715743Root8.244

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.007
SRR8749028MeJA induced 9h4.097
SRR8749029MeJA induced 9h1.035
SRR8749030Uninduced1.758
SRR8749031Uninduced0.659
SRR8749032Uninduced0.782

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.305
SRR8400027Control-Root26.560

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved