Gene detail information of Glyur000009s00001480.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20650.2 | 0 | RING/U-box superfamily protein |
| NR | XP_007149832.1 | 0 | hypothetical protein PHAVU_005G102100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C919|ATL19_ARATH | 1.00E-06 | Putative RING-H2 finger protein ATL19 |
| trEMBL | tr|V7BYX4|V7BYX4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW21826.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 599326 | 606994 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001480.1 | PF13639.1 | zf-RING_2 | 501 | 547 | 2.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.953 |
| SRR1783600 | control | 11.504 |
| SRR1783602 | moderate drought stress | 10.814 |
| SRR1811619 | moderate drought stress | 10.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.304 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.002 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.617 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.279 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.617 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.680 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.746 |
| SRR2967015 | Control (Tissue:root) | 27.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.712 |
| SRR9715740 | Leave | 16.009 |
| SRR9715741 | Leave | 18.176 |
| SRR9715739 | Root | 5.196 |
| SRR9715742 | Root | 10.154 |
| SRR9715743 | Root | 8.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.176 |
| SRR8749028 | MeJA induced 9h | 20.097 |
| SRR8749029 | MeJA induced 9h | 11.226 |
| SRR8749030 | Uninduced | 24.845 |
| SRR8749031 | Uninduced | 11.488 |
| SRR8749032 | Uninduced | 7.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.652 |
| SRR8400027 | Control-Root | 22.780 |