Gene detail information of Glyur000009s00001481.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15270.1 | 6.00E-31 | squamosa promoter binding protein-like 5 |
| NR | XP_002275728.1 | 3.47E-63 | PREDICTED: squamosa promoter-binding protein 1 isoform X2 [Vitis vinifera] |
| Swissprot | tr|Q38741|SBP1_ANTMA | 2.00E-40 | Squamosa promoter-binding protein 1 |
| trEMBL | tr|E0CTG4|E0CTG4_VITVI | 1.00E-63 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI21879.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 607823 | 610584 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001481.1 | PF03110.9 | SBP | 61 | 136 | 9.30E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.811 |
| SRR1783600 | control | 0.764 |
| SRR1783602 | moderate drought stress | 0.969 |
| SRR1811619 | moderate drought stress | 0.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.255 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.107 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.804 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.884 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.029 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.696 |
| SRR2967015 | Control (Tissue:root) | 1.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.528 |
| SRR9715740 | Leave | 9.878 |
| SRR9715741 | Leave | 14.800 |
| SRR9715739 | Root | 0.689 |
| SRR9715742 | Root | 1.987 |
| SRR9715743 | Root | 1.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.113 |
| SRR8749028 | MeJA induced 9h | 2.620 |
| SRR8749029 | MeJA induced 9h | 2.749 |
| SRR8749030 | Uninduced | 0.423 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.833 |
| SRR8400027 | Control-Root | 2.164 |