Gene detail information of Glyur000009s00001482.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44280.12.00E-71RING 1A
NRXP_003539538.10PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Glycine max]
Swissprottr|Q9FKW0|RNG1A_ARATH3.00E-121Putative E3 ubiquitin-protein ligase RING1a
trEMBLtr|K7LW36|K7LW36_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G33300.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009617280624364+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001482.1PF00097.20zf-C3HC41371761.40E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.198
SRR1783600control19.564
SRR1783602moderate drought stress29.274
SRR1811619moderate drought stress29.108

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.777
DRR006520Root Summer glycyrrhizin high producing strain17.829
DRR006521Root Winter glycyrrhizin high producing strain17.794
DRR006522Root Winter glycyrrhizin high producing strain17.418
DRR006523Root Summer glycyrrhizin low producing strain18.570
DRR006524Root Summer glycyrrhizin low producing strain19.367
DRR006525Leaf Summer glycyrrhizin high producing strain12.040
DRR006526Leaf Summer glycyrrhizin high producing strain11.634

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.945
SRR2868004Drought Stress(Tissue:root)15.598
SRR2967015Control (Tissue:root)18.009

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.738
SRR9715740Leave7.818
SRR9715741Leave7.482
SRR9715739Root2.229
SRR9715742Root7.436
SRR9715743Root7.169

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.051
SRR8749028MeJA induced 9h22.872
SRR8749029MeJA induced 9h21.578
SRR8749030Uninduced15.928
SRR8749031Uninduced9.077
SRR8749032Uninduced13.716

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.331
SRR8400027Control-Root18.883

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved