Gene detail information of Glyur000009s00001488.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53970.11.00E-118Tyrosine transaminase family protein
NRXP_004487261.10PREDICTED: probable aminotransferase TAT2-like isoform X1 [Cicer arietinum]
COGYP_004628567.11.00E-43tyrosine/nicotianamine aminotransferase [Thermodesulfobacterium geofontis OPF15]
Swissprottr|Q9FN30|TAT2_ARATH4.00E-145Probable aminotransferase TAT2
trEMBLtr|A0A072VBJ4|A0A072VBJ4_MEDTR0Tyrosine/nicotianamine family aminotransferase {ECO:0000313|EMBL:KEH39172.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009656038658921+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00815TAT EC:2.6.1.5 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960
Novobiocin biosynthesismap00401


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001488.1PF00155.16Aminotran_1_2903919.80E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.441
SRR1783600control22.718
SRR1783602moderate drought stress15.287
SRR1811619moderate drought stress15.429

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.485
DRR006520Root Summer glycyrrhizin high producing strain18.502
DRR006521Root Winter glycyrrhizin high producing strain8.118
DRR006522Root Winter glycyrrhizin high producing strain8.663
DRR006523Root Summer glycyrrhizin low producing strain23.132
DRR006524Root Summer glycyrrhizin low producing strain24.441
DRR006525Leaf Summer glycyrrhizin high producing strain22.060
DRR006526Leaf Summer glycyrrhizin high producing strain22.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.953
SRR2868004Drought Stress(Tissue:root)38.095
SRR2967015Control (Tissue:root)36.127

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.671
SRR9715740Leave37.370
SRR9715741Leave31.245
SRR9715739Root25.252
SRR9715742Root13.204
SRR9715743Root16.146

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.777
SRR8749028MeJA induced 9h9.774
SRR8749029MeJA induced 9h9.393
SRR8749030Uninduced5.268
SRR8749031Uninduced1.614
SRR8749032Uninduced3.080

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.530
SRR8400027Control-Root37.235

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved