Gene detail information of Glyur000009s00001495.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G28450.10nucleotide binding;protein binding
NRXP_003519367.10PREDICTED: DDB1- and CUL4-associated factor 13 [Glycine max]
COGYP_007091409.13.00E-25WD40 repeat, subgroup [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q3Y8L7|DAW1_CHLRE4.00E-15Dynein assembly factor with WDR repeat domains 1
trEMBLtr|I1JI32|I1JI32_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G41900.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00009698135703153-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000009s00001495.1PF00400.27WD4062952.10E-06
Glyur000009s00001495.1PF00400.27WD401031374.70E-09
Glyur000009s00001495.1PF00400.27WD401972320.0044
Glyur000009s00001495.1PF00400.27WD402813161.10E-06
Glyur000009s00001495.1PF00400.27WD403353602.20E-06
Glyur000009s00001495.1PF04158.9Sof13614471.30E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.166
SRR1783600control21.333
SRR1783602moderate drought stress23.446
SRR1811619moderate drought stress23.319

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.077
DRR006520Root Summer glycyrrhizin high producing strain36.347
DRR006521Root Winter glycyrrhizin high producing strain48.155
DRR006522Root Winter glycyrrhizin high producing strain46.986
DRR006523Root Summer glycyrrhizin low producing strain26.422
DRR006524Root Summer glycyrrhizin low producing strain26.239
DRR006525Leaf Summer glycyrrhizin high producing strain9.889
DRR006526Leaf Summer glycyrrhizin high producing strain9.892

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.518
SRR2868004Drought Stress(Tissue:root)26.733
SRR2967015Control (Tissue:root)25.542

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.527
SRR9715740Leave24.071
SRR9715741Leave16.480
SRR9715739Root10.711
SRR9715742Root30.526
SRR9715743Root23.342

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.235
SRR8749028MeJA induced 9h36.119
SRR8749029MeJA induced 9h29.132
SRR8749030Uninduced10.883
SRR8749031Uninduced3.330
SRR8749032Uninduced5.437

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.998
SRR8400027Control-Root32.720

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved