Gene detail information of Glyur000010s00000886.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50230.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004515850.1 | 0 | PREDICTED: protein tipD-like [Cicer arietinum] |
| COG | YP_003889651.1 | 1.00E-41 | Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 4.00E-24 | Protein Mut11 |
| trEMBL | tr|I1K068|I1K068_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G02850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 35147 | 38229 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000886.1 | PF08614.6 | ATG16 | 48 | 174 | 5.70E-17 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 221 | 258 | 9.40E-06 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 306 | 343 | 1.10E-07 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 348 | 384 | 9.90E-06 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 392 | 426 | 0.0017 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 451 | 472 | 0.00049 |
| Glyur000010s00000886.1 | PF00400.27 | WD40 | 476 | 513 | 4.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.189 |
| SRR1783600 | control | 3.182 |
| SRR1783602 | moderate drought stress | 3.183 |
| SRR1811619 | moderate drought stress | 3.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.783 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.161 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.039 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.730 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.486 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.730 |
| SRR2967015 | Control (Tissue:root) | 10.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.969 |
| SRR9715740 | Leave | 13.967 |
| SRR9715741 | Leave | 10.340 |
| SRR9715739 | Root | 1.023 |
| SRR9715742 | Root | 4.051 |
| SRR9715743 | Root | 3.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.795 |
| SRR8749028 | MeJA induced 9h | 8.192 |
| SRR8749029 | MeJA induced 9h | 3.462 |
| SRR8749030 | Uninduced | 4.663 |
| SRR8749031 | Uninduced | 4.888 |
| SRR8749032 | Uninduced | 3.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.627 |
| SRR8400027 | Control-Root | 9.084 |