Gene detail information of Glyur000010s00000892.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24780.2 | 2.00E-177 | Pectin lyase-like superfamily protein |
| NR | KHN34377.1 | 0 | Putative pectate lyase 22 [Glycine soja] |
| COG | YP_001628843.1 | 8.00E-22 | hypothetical protein Bpet0241 [Bordetella petrii DSM 12804] |
| Swissprot | tr|Q93Z25|PLY22_ARATH | 0 | Probable pectate lyase 22 (Precursor) |
| trEMBL | tr|I1K070|I1K070_SOYBN | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 62938 | 65086 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01728 | pel | EC:4.2.2.2 | Pentose and glucuronate interconversions | map00040 |
| Quorum sensing | map02024 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000892.1 | PF00544.14 | Pec_lyase_C | 132 | 320 | 9.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 138.070 |
| SRR1783600 | control | 139.433 |
| SRR1783602 | moderate drought stress | 12.561 |
| SRR1811619 | moderate drought stress | 12.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.236 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.369 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.048 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.139 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 64.772 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.714 |
| SRR2967015 | Control (Tissue:root) | 41.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 28.702 |
| SRR9715740 | Leave | 1.064 |
| SRR9715741 | Leave | 4.381 |
| SRR9715739 | Root | 9.426 |
| SRR9715742 | Root | 3.840 |
| SRR9715743 | Root | 5.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.513 |
| SRR8749028 | MeJA induced 9h | 0.430 |
| SRR8749029 | MeJA induced 9h | 0.350 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 279.825 |
| SRR8400027 | Control-Root | 245.742 |