Gene detail

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Gene detail information of Glyur000010s00000895.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48430.1	relative of early flowering 6
NR	XP_004515844.1	PREDICTED: lysine-specific demethylase REF6-like [Cicer arietinum]
Swissprot	tr\|Q9STM3\|REF6_ARATH	Lysine-specific demethylase REF6
trEMBL	tr\|V7CBG9\|V7CBG9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW27504.1}

Sequence

Transcript Sequence

>Glyur000010s00000895.1
ACCCCACTCACACATCTCAACTCTCACACTGCTCTGCCTCCAAACCCAAACTATTCCCCATTTTTTCCCCTTTTCACCGCACTCCTTCACTTCTCTGTAACATCGAAAACAGAGCAACCAAGCAATCAGAGATTAAAAAATAAAAAAAAAATCCCAAAAGCAGTAGAGAGAAAAAAGTTTCTCTGTTTTTATTATTTTTTAAAAAAGAAAAAAGAAATATGCCCGCAAAGATATAAAGAAAAAAAAAGAGAAACGCGAAGCATGGAATCTGAAGAGCAAGTTGGGGCTGGCTTGGTTTAGCGTTGTCCCCTGTTTGGGAAAAACAGGGCAGTGACTCAGTGAGTGTGCTGAGAAAACCAAAACCAACCCCCAAAAAATTCACCAGCAATGGCGGGTTCCGAGGAGGTATTCCCGTGGCTAAAATCGCTGCCGGTGGCGCCGGAGTACCGTCCAAGCGCGGCGGAGTTNCAAGATCCGATCGCTTACATTTTCAAAATCGAGAAGGAAGCTTCAAAATACGGAATCTGCAAGATCATTCCCCCTGTTCCACCTTCCCCTAAGAAAACCGCAATTGCGAACCTGAACCGGTCACAGCCCCGGTTCACCACACGTCAGCAACAGATCGGGTTCTGTCCACGTCGGCAGCAACCGGTCCGTCGCCCAGTCTGGCACAGCGGCCACCACTACTCCTTCCGCGACTTCGAAGCAAAAGCCAAAGCCTTCGAAAAAAGCTACCTCAAAAAGGGAAAGAAAAATAGCACCCCACTCTCTCCTCTTGAAGTGGAAACTCTGTACTGGAAAGCAACCGTTGACAAGCCGTTTTCCGTTGAGTACGCAAACGACATGCCGGGTTCTGCGTTTGGGGCAGTGAACGACGATGGGGGATGTGGAGACGGTTACGTGACGGTTGGAGAGACGGCGTGGAACATGAGAGGGGTTTCGAGGGCAAATGGGTCATTGCTGAGGTTCATGAAGGAGGAGATTCCCGGTGTTACTTCCCCTATGGTGTATGTTGCCATGTTGTTCAGCTGGTTCGCTTGGCATGTGGAGGACCATGACTTGCATAGCTTGAATTACCTCCACATGGGTGCTCCGAAGACATGGTATGGTGTTCCTAGAGATGCTGCTGTTGCATTTGAGGAGGTTGTGAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGGGAGAAAACTACAGTGATGTCTCCCGAAGTGTTCGTTACTGCAGGTGTTCCGTGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTCACATTTCCAAGAGCCTATCACACAGGATTCAGTCATGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGCAGGGCTTCAATTAATTATCCTCCCATGGTTTCACACTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGGAGGCATCAGCGCTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAAATGTAATTAAAGAACTATTTGTACAGGACGTGTTACAGAATAACGATCTGCTTCATGCACTTTGCAAAGAATCTGCTATAGTNCTTCTTCCGCGTAGCTCTTCTGACTTCTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAACTAAAAGTGAACCCTGAGTTTTCTCTCAATGAATGCAATTCTGAGGGAATGAATTCCTCAAAAAACTTTATTTCAGATGACCTGGTGTTCAACAGGAACCATGGAATCAAAAAAGTGAAAGGTTTTTATTCTGTAAAAGAAAAGTTTGCTACATTGTGTGAAAGGAACAGGGTTTGTTCATTCAGTGCAAATGGTAACATATGCACCTCAAGTAAAACACTGCAAAGAGACATTGAAAAAGAAACAACTCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTCGCTATTGTACAGCCTAGAGAACCAGCAGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGATCGTTGGTTCTGGAGTAAGTAGAAATAAATTTACTGTTGCCCATGAAGATGCAAGATGGATAAAAGAGAATGCCAGAAATGATGTTGATGATGTTCCTGTTGAACCTGTTGACCAACAGTCACAGATTGCTGATCAAAATTGTATGGAGGCTTTAAATACTGAAAGAAAAAAAGGCAACACAGCTCTTGCATTATTGGCTACAGCGTATGGAAATTCTTCTGACTCTGAGGATGATCAAGGTGACTCAGATATTGCAGTTGATGGTGATGAATTGAACATGGTCAAGCATCCATCAGCAAGTAAATCTCAGGAGATATCTTGTTTGCCTTCTCATTTTGAAGATTGCCATGCTAGTCCAGTGGTTCGACTTGATAGAGATGATATTCCTTCAAACAGTTTTGACAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGTCCTTTTGACCACTCTGTTAAGTCAGAAGACTATGACATCACTTCAGGGGTAGCATTCAAAAATACTAGGGCAGCACCTCATTCCACCTTGAATTGTTCCCAAGATACTCATGCTGAAACACCATCGCTGGGCAAGACTGTCATTCCCACTGAGAATAAAAATGTTTCATTGGTGCCACCATCTGATGAAGACTCATCTAGACTGCATGTGTTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGAGCACATATATTGCTCCTATGCCATCCAGACTATCCAAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAACTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGCAATGGGGACTGGGCTGTAAAGCTGGGAATCAACCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCACTTTATTGTAAGCAGATGCCTTACAACTCTGTTCTGTATCATGCATTTGGTCGTAGCTCTCCAGCAAGCTCTCCCATAGAGCCCAAGGTCTATCAGAGAAGGGCCAACAGGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCTTTTTAGCAAAAAGAGATTCTGAAGATGTTGGGGATGAGAAAAGCTCACATGGGTGGCCATTACCTGATGAGAAAATCGACAGATTGGAAAGTACCCACAAAAGCAATACTATGATTAGAAAATCTGGTAGGAAGAGGAAAATGACCGCAGAGAGTGGAGGAGCCGGTGAAGGAAGTTTTGCTGAGAGAGNTTGGCCTTCAGATAATTCAATTGAAGATAAATGCAATCAATCTCGAAGGAGGATTCTTGGAAGTAAGCGAACCAGGCATACTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAGAAAGCATGTAAGGAAGCATACAAAATGTACAGAAAGTGACGCAGTTTCAGATGATTCGCTGGATGATAATACTACTCATATACAGAATTGGAGGAAGGCTATTGCCAAGGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGATGCAATGGACAATGATTCTGATTGGCCACATGGAGGAGAGCTTAGCGACAAGCAGGACGCGTTTTCAGAGGATTCTTTGGGTGTTGGTTCTCTTCAGCAGCATAGAAAGACTCCTAAAAGCAAGTATGATCAATACATTGCTGAAGAAGATGTGATTTCTGATGACCAAACTGAGGTTTATTTTCAGAAGCAGGAACGAAGGACATCTAAAAGCAGGCAATGCAAATATCTTTCTGAAAAAGATGCAGTGACATCTGACGACCAGCTGGAGCACTGCAAGCAGAAGCAGCAACGGAGGAATTCCAAAAGCAAGCAAGACGATTACCTTGTTGGAGAGGATATTATATCTGATGACCAACTGGAATGCCATTCTCGCAAGTATCAAAAGAGGATTCCTAAAGACAAGCCAACCGAATGTGTCACTGGGGAAGATGTAATGTCTGATGACCAGCCGGAGGATNACTTTCAGAAGCCCCAAAGGAGTGTTCGAAGGAGCAAGCAAAATAAATATAGTGATAGAGAAGTTATGGATGACTCGGCCGAAAATAATTCTCATATTCTGTATAGAACTCCTAAAAGGAAGCAAGCTAAATGCACAGATGAAGACAACATAAATTCAGATGATCAGATGGAGGACGATTGTCAACAGCAACACAGGAGAACTCTTCGAAGTAAGCAATCTAAATCGCAAACTCTTCAACAAATGAAACAAGCTAACACACACCGTGTGAGAAGCAAGACATCGCAGCCAGTGAAACGTGGTGCTCAAGTGCTAATGAAATCAAAGGCTCCTTGGCAAACAAAGCAGCAGCCTCGTGTGTGGAATAATCAATCGGGTAACTCCAGAGACGAGACTTCACATATTGAAGAGGATGAAGAAGGCGGACCTAGCACACGCCTCAGGAAGAGAGTCCCAAAAGTTCAGAATGAATCTGAAGGAAAAACAAAAGAAAAGGAAACCAAAAGGAAAAAAGTGAAGAATGCACCAGCTGCAAAGGTTTCAGCTGGCCATGCCAAAATGAAGGATGAGGAAGGAGAATATCAGTGTGACATTGAGGGGTGTACCATGAGTTTTGGTTCTAAACAGGAGCTGGTGCATCACAAGAGAAACATATGTCCTGTGAAAGGATGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCACCGTCGTGTTCACGATGATGACCGCCCCTTGAAGTGCCCGTGGAAGGGGTGCAAGATGGCTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGGGTCCACACNGGTGCTCGTCCATATGTATGCGCTGAGCCGGGGTGTGGGCAAACATTCAGATTCGTTTCTGATTTCAGTCGCCATAAGCGAAAAACTGGTCATTCAGCAAAGAAGACTCGTTGA

Protein Sequence

>Glyur000010s00000895.1
MAGSEEVFPWLKSLPVAPEYRPSAAEXQDPIAYIFKIEKEASKYGICKIIPPVPPSPKKTAIANLNRSQPRFTTRQQQIGFCPRRQQPVRRPVWHSGHHYSFRDFEAKAKAFEKSYLKKGKKNSTPLSPLEVETLYWKATVDKPFSVEYANDMPGSAFGAVNDDGGCGDGYVTVGETAWNMRGVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVTAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGISAEPRSSRLKDKRKGVGENVIKELFVQDVLQNNDLLHALCKESAIVLLPRSSSDFSVCSKLRVGSQQLKVNPEFSLNECNSEGMNSSKNFISDDLVFNRNHGIKKVKGFYSVKEKFATLCERNRVCSFSANGNICTSSKTLQRDIEKETTQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWIVGSGVSRNKFTVAHEDARWIKENARNDVDDVPVEPVDQQSQIADQNCMEALNTERKKGNTALALLATAYGNSSDSEDDQGDSDIAVDGDELNMVKHPSASKSQEISCLPSHFEDCHASPVVRLDRDDIPSNSFDNYEYYMHKRVERIMSPFDHSVKSEDYDITSGVAFKNTRAAPHSTLNCSQDTHAETPSLGKTVIPTENKNVSLVPPSDEDSSRLHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYMWKNTVYRHANREDEERIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYCKQMPYNSVLYHAFGRSSPASSPIEPKVYQRRANRQKKVVAGKWCGKVWMSNQVHPFLAKRDSEDVGDEKSSHGWPLPDEKIDRLESTHKSNTMIRKSGRKRKMTAESGGAGEGSFAERXWPSDNSIEDKCNQSRRRILGSKRTRHTERDDTASEGDYSPLQHHRKHVRKHTKCTESDAVSDDSLDDNTTHIQNWRKAIAKEAKFIDSDVVSDDAMDNDSDWPHGGELSDKQDAFSEDSLGVGSLQQHRKTPKSKYDQYIAEEDVISDDQTEVYFQKQERRTSKSRQCKYLSEKDAVTSDDQLEHCKQKQQRRNSKSKQDDYLVGEDIISDDQLECHSRKYQKRIPKDKPTECVTGEDVMSDDQPEDXFQKPQRSVRRSKQNKYSDREVMDDSAENNSHILYRTPKRKQAKCTDEDNINSDDQMEDDCQQQHRRTLRSKQSKSQTLQQMKQANTHRVRSKTSQPVKRGAQVLMKSKAPWQTKQQPRVWNNQSGNSRDETSHIEEDEEGGPSTRLRKRVPKVQNESEGKTKEKETKRKKVKNAPAAKVSAGHAKMKDEEGEYQCDIEGCTMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHDDDRPLKCPWKGCKMAFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKTR

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	96998	105372	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000895.1	PF02375.12	JmjN	18	51	1.90E-11
Glyur000010s00000895.1	PF02373.17	JmjC	206	325	4.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.037
SRR1783600	control	13.938
SRR1783602	moderate drought stress	12.676
SRR1811619	moderate drought stress	12.654

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.424
DRR006520	Root Summer glycyrrhizin high producing strain	13.399
DRR006521	Root Winter glycyrrhizin high producing strain	18.545
DRR006522	Root Winter glycyrrhizin high producing strain	18.206
DRR006523	Root Summer glycyrrhizin low producing strain	13.076
DRR006524	Root Summer glycyrrhizin low producing strain	13.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.958
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	19.779
SRR2868004	Drought Stress(Tissue:root)	20.130
SRR2967015	Control (Tissue:root)	25.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.492
SRR9715740	Leave	10.069
SRR9715741	Leave	10.489
SRR9715739	Root	1.344
SRR9715742	Root	9.274
SRR9715743	Root	8.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.234
SRR8749028	MeJA induced 9h	44.881
SRR8749029	MeJA induced 9h	27.711
SRR8749030	Uninduced	8.329
SRR8749031	Uninduced	6.288
SRR8749032	Uninduced	9.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	18.248
SRR8400027	Control-Root	16.358