Gene detail information of Glyur000010s00000896.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48440.19.00E-109Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004515843.10PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cicer arietinum]
Swissprottr|Q9STM4|C3H43_ARATH2.00E-132Zinc finger CCCH domain-containing protein 43
trEMBLtr|G7JMP1|G7JMP1_MEDTR0Zinc finger C-x8-C-x5-C-x3-H type family protein {ECO:0000313|EMBL:AES91101.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00010107582111460+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000010s00000896.1PF00642.19zf-CCCH1531755.70E-08
Glyur000010s00000896.1PF00642.19zf-CCCH2002216.80E-06
Glyur000010s00000896.1PF00642.19zf-CCCH2452684.50E-10
Glyur000010s00000896.1PF00642.19zf-CCCH3804064.50E-07
Glyur000010s00000896.1PF00642.19zf-CCCH4284511.50E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control102.595
SRR1783600control103.008
SRR1783602moderate drought stress94.508
SRR1811619moderate drought stress94.236

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain82.371
DRR006520Root Summer glycyrrhizin high producing strain82.280
DRR006521Root Winter glycyrrhizin high producing strain79.991
DRR006522Root Winter glycyrrhizin high producing strain78.004
DRR006523Root Summer glycyrrhizin low producing strain98.930
DRR006524Root Summer glycyrrhizin low producing strain98.267
DRR006525Leaf Summer glycyrrhizin high producing strain60.103
DRR006526Leaf Summer glycyrrhizin high producing strain59.712

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)114.916
SRR2868004Drought Stress(Tissue:root)112.882
SRR2967015Control (Tissue:root)121.418

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave70.508
SRR9715740Leave68.975
SRR9715741Leave79.145
SRR9715739Root39.923
SRR9715742Root63.829
SRR9715743Root56.321

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h149.528
SRR8749028MeJA induced 9h221.366
SRR8749029MeJA induced 9h227.867
SRR8749030Uninduced59.194
SRR8749031Uninduced61.285
SRR8749032Uninduced103.251

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root123.139
SRR8400027Control-Root119.794

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved