Gene detail

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Gene detail information of Glyur000010s00000918.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63420.1	0	RNA-metabolising metallo-beta-lactamase family protein
NR	XP_006600800.1	0	PREDICTED: uncharacterized protein LOC100814619 isoform X1 [Glycine max]
COG	YP_005268665.1	7.00E-107	ribonuclease J [Acetobacterium woodii DSM 1030]
Swissprot	tr\|Q9LU92\|TGT4_ARATH	3.00E-08	Trihelix transcription factor GT-4
trEMBL	tr\|K7MLE6\|K7MLE6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G13780.4}

Sequence

Transcript Sequence

>Glyur000010s00000918.1
ATGGCTACTCGTTCTTCTCTTTCCCTTCGCCCTCACAACAACCTCCTCTATCACAGTNACCGCCCTCACCCAACAAGGCCTTCCCCTCATTGCTCTTTTCCCTCCTCTTCCCTCCCAGATGCTGATGGATATAGAGTACTGCGCGAAAGATCAGGACGAATAGAAGGTCCTAGAAAAAGCATGGAGGACTCTGTTAAACGCAAGATGGAGCAATTTTATGAAGGTTCAGATGGGCCACCCCTCCGGGTTCTNCCCATTGGTGGGTTGGGTGAAATTGGGATGAACTGCATGCTTGTTGGGAACCGTGACCGCTATATCCTCATCGATGCTGGTGTCATGTTTCCGGACCATGATGAGCTCGGGGTCCAAAAGATAATACCTGATACGACATTTATAAAAAAATGGAGCCACAAAATTGAAGCAGTAGTTATAACACATGGCCATGAAGATCATATTGGCGCATTGCCTTGGGTTATCCCAGCATTGGATTCTNATACACCAATTTTTGCATCATCGTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCACGGGATTTTTGTTCCATCCCGACTCAAAATATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAGCCTATCACAGTGACCCATTCTATTCCTGATTGCTGTGGATTAGTCCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTGGAGAAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAGTCAGTGAATCTGTTGTTGCAGATGCATTATTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATAACTACCCAGTTTGCATCAAATATACACCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTGACTGGTAGAAAGTTGGTATTTGCTGGCATGTCTTTAAGGACATATTTGGATGTTGCTTGGAGGGATGGAAAGGCTCCCATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCGCCAAAAGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTACGGAAGTAGTCATACTTTCAAACTGACAAAGGAAGATGTTCTGTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCAGCACACTGCTGTTATTAAGAATGGAGAGATGCTCGGTGTTTCACATTTGAGAAATAGAAGAGTTCTTTCTAATGGTTTTATTTCACTTGGAAAAGAGAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTAGTTAGCATGGAAATATGTCGCCCTCAAAATTTAGACAGTTCAGTTGAAAACACCTTAAAAGGNAAAATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAATCTGTTGGATGCACTCTATAAAGCTGCCCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGGCTCACATGGAAAAAATTGTGTCTGAGATGTTGAGGAAAATGGTGAGGAGGTATAGTGGCAAACNGCCTGAAGTTATTGCCGTCGCAATAGAAAATCCTGCAGCTGTTCTTGCTAGTGAGATAAACACAAGGTTATCTGGCAAATCCCGTGTGGGTGGGATGTCAACATTGAGAAATATAGTGGATGGACATGGGAAAGAAAATCAGTCCACCAAAATGCAAATGAGAGGTCTTCTAACTAAGGAAGATGCTGCTACCTCAACTGGAGCTGCGATTGATTTGTGTGATACGGTTACAGAGAATTCAAATGAAATTTGGAAACCATTTTTTGAATCCTCGCCATTTAGGAAGTCAGGCAAAGCTAACAATGGTTNTGCTCCACTAAAGAAGTCCCAACCGAAGAATGATGGTTCTGATGATGCTGAAGAATACAAGTCTGAAAAGGAATCAAATTCTGAAGCCAAATCTTCAAATTCAAAATCAGTGAAGAGGAACAAATGGAAAGAGGAGGAAGTTAAGAAACTGATTGGTATGCGCAGGGAATTGAATGGAAAATTTCAAGGTTTGAATGGAAGGATGGTTCTCTGGGAAGAAATATCTAAGAACTTGTTGGATAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTATGTGGACATCTTTGATACAGAAATATGAGGAGGTCAAGAATGAGAAGAACAGAAAGAAAAGATGGCTATATCTTGAGGACATGGAAAGGGTTCTGTCTGATAATGAGGCACTGGCAAAAATATGATTGGAGTGGTGATGGACAAGACGAGATAAATTTGCAAGAGCTTTCTGCATTGAGATTGATAACGCAGGTCTGAGCATGGTTGCTACCAGGAAGATGATCCATCAGTTGCATGACCCTCGTGAGATTGAAGATCCATAGTTTCGCGAGTTGGGCAGTATTAACAGGGATTGCTATTTACACAACCAGAAGTAAATGAGGGATAAGTATGCCAGGTTTAGGGGATGATTATTCCCCACCTCAAATGGGTTGCCCCGACCAAATGGCAGCATTTTTGGTCATTTTGATGGCATTAATTGACACTAGAGGATTGATATAAAATGGCGTGGATACCAAATTAAATTTGTTTTATTTTTTGTCATAAATTAGTTTTATTATTTTTTGTTCGTGGCATGTGTTGCCGTGTTGGGTGTCATAAAGCAACCATTTTATTTTACATTTTGGCCACATACAACAGTGAAAAGTGAAAATCATTATGCTTCTACTTTTGCCGGTTCCATTTGTGTACCGGTGCACAACCAAATCAATACCGTTGAACGTAAACTATAAATTTTATTGATGAATGGTCGACTCCAGAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00010	209222	218528	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0003723 RNA binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000010s00000918.1	PF00753.22	Lactamase_B	90	250	5.60E-23
Glyur000010s00000918.1	PF07521.7	RMMBL	436	467	2.10E-08
Glyur000010s00000918.1	PF13837.1	Myb_DNA-bind_4	772	855	3.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.126
SRR1783600	control	3.303
SRR1783602	moderate drought stress	5.978
SRR1811619	moderate drought stress	5.946

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.081
DRR006520	Root Summer glycyrrhizin high producing strain	5.040
DRR006521	Root Winter glycyrrhizin high producing strain	2.983
DRR006522	Root Winter glycyrrhizin high producing strain	3.014
DRR006523	Root Summer glycyrrhizin low producing strain	7.505
DRR006524	Root Summer glycyrrhizin low producing strain	7.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.794

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.407
SRR2868004	Drought Stress(Tissue:root)	10.636
SRR2967015	Control (Tissue:root)	9.076

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.490
SRR9715740	Leave	6.495
SRR9715741	Leave	6.754
SRR9715739	Root	0.666
SRR9715742	Root	4.102
SRR9715743	Root	3.351

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.115
SRR8749028	MeJA induced 9h	8.513
SRR8749029	MeJA induced 9h	5.890
SRR8749030	Uninduced	1.825
SRR8749031	Uninduced	0.463
SRR8749032	Uninduced	0.954

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.692
SRR8400027	Control-Root	7.022