Gene detail information of Glyur000010s00000919.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49180.1 | 5.00E-53 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004515895.1 | 0 | PREDICTED: WD repeat-containing protein 18-like [Cicer arietinum] |
| COG | YP_004050921.1 | 3.00E-18 | wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672] |
| Swissprot | tr|Q9M3B4|RID3_ARATH | 3.00E-60 | Protein ROOT INITIATION DEFECTIVE 3 |
| trEMBL | tr|G7JMJ5|G7JMJ5_MEDTR | 0 | WD domain, G-beta repeat protein {ECO:0000313|EMBL:AES91055.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 220446 | 224779 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000919.1 | PF00400.27 | WD40 | 117 | 155 | 3.80E-06 |
| Glyur000010s00000919.1 | PF00400.27 | WD40 | 172 | 209 | 0.00092 |
| Glyur000010s00000919.1 | PF00400.27 | WD40 | 270 | 301 | 4.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.897 |
| SRR1783600 | control | 1.793 |
| SRR1783602 | moderate drought stress | 0.279 |
| SRR1811619 | moderate drought stress | 0.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.315 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.230 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.051 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.413 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.362 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.661 |
| SRR2967015 | Control (Tissue:root) | 4.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.479 |
| SRR9715740 | Leave | 4.804 |
| SRR9715741 | Leave | 2.008 |
| SRR9715739 | Root | 0.298 |
| SRR9715742 | Root | 0.314 |
| SRR9715743 | Root | 0.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.230 |
| SRR8749029 | MeJA induced 9h | 0.107 |
| SRR8749030 | Uninduced | 0.348 |
| SRR8749031 | Uninduced | 0.040 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.608 |
| SRR8400027 | Control-Root | 8.253 |