Gene detail information of Glyur000010s00000922.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22590.1 | 5.00E-120 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_004516846.1 | 0 | PREDICTED: probable trehalose-phosphate phosphatase F-like [Cicer arietinum] |
| COG | YP_003269585.1 | 3.00E-63 | trehalose-phosphatase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9SUW0|TPPG_ARATH | 5.00E-148 | Probable trehalose-phosphate phosphatase G |
| trEMBL | tr|V7CFF0|V7CFF0_PHAVU | 0 | Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 253924 | 256047 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01087 | otsB | EC:3.1.3.12 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000922.1 | PF02358.11 | Trehalose_PPase | 125 | 366 | 3.50E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.042 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.631 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.788 |
| SRR2967015 | Control (Tissue:root) | 0.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.057 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.179 |
| SRR8749028 | MeJA induced 9h | 0.757 |
| SRR8749029 | MeJA induced 9h | 0.629 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.714 |
| SRR8749032 | Uninduced | 0.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.101 |
| SRR8400027 | Control-Root | 0.058 |