Gene detail information of Glyur000010s00000944.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50450.1 | 1.00E-102 | HCP-like superfamily protein with MYND-type zinc finger |
| NR | XP_003523145.1 | 3.29E-157 | PREDICTED: F-box protein At1g67340 [Glycine max] |
| COG | YP_003142817.1 | 5.00E-08 | hypothetical protein Shel_04070 [Slackia heliotrinireducens DSM 20476] |
| Swissprot | tr|Q9FK27|FB342_ARATH | 2.00E-128 | F-box protein At5g50450 |
| trEMBL | tr|V7AW83|V7AW83_PHAVU | 5.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:ESW09907.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00010 | 367675 | 369133 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000010s00000944.1 | PF08238.7 | Sel1 | 97 | 116 | 27 |
| Glyur000010s00000944.1 | PF08238.7 | Sel1 | 129 | 164 | 0.1 |
| Glyur000010s00000944.1 | PF08238.7 | Sel1 | 166 | 195 | 7.5 |
| Glyur000010s00000944.1 | PF01753.13 | zf-MYND | 279 | 318 | 4.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.264 |
| SRR1783600 | control | 1.234 |
| SRR1783602 | moderate drought stress | 1.378 |
| SRR1811619 | moderate drought stress | 1.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.396 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.965 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.957 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.640 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.259 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.256 |
| SRR2967015 | Control (Tissue:root) | 9.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.501 |
| SRR9715740 | Leave | 5.820 |
| SRR9715741 | Leave | 7.739 |
| SRR9715739 | Root | 1.131 |
| SRR9715742 | Root | 4.019 |
| SRR9715743 | Root | 3.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.425 |
| SRR8749028 | MeJA induced 9h | 6.252 |
| SRR8749029 | MeJA induced 9h | 2.742 |
| SRR8749030 | Uninduced | 0.844 |
| SRR8749031 | Uninduced | 1.259 |
| SRR8749032 | Uninduced | 2.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.891 |
| SRR8400027 | Control-Root | 4.043 |