Gene detail information of Glyur000010s00000945.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48540.19.00E-70Cytidine/deoxycytidylate deaminase family protein
NRKHN34422.16.21E-94Deoxycytidylate deaminase [Glycine soja]
COGYP_002429378.14.00E-45dCMP deaminase [Desulfatibacillum alkenivorans AK-01]
trEMBLtr|I1K0B7|I1K0B7_SOYBN2.00E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00010375071376840-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01493comEB EC:3.5.4.12 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006220  pyrimidine nucleotide metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004132  dCMP deaminase activity

GO:0008270  zinc ion binding

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000010s00000945.1PF00383.17dCMP_cyt_deam_11943.70E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.088
SRR1783600control0.113
SRR1783602moderate drought stress0.258
SRR1811619moderate drought stress0.276

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.352
DRR006520Root Summer glycyrrhizin high producing strain1.302
DRR006521Root Winter glycyrrhizin high producing strain0.272
DRR006522Root Winter glycyrrhizin high producing strain0.424
DRR006523Root Summer glycyrrhizin low producing strain0.633
DRR006524Root Summer glycyrrhizin low producing strain0.263
DRR006525Leaf Summer glycyrrhizin high producing strain0.606
DRR006526Leaf Summer glycyrrhizin high producing strain0.672

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.249
SRR2868004Drought Stress(Tissue:root)2.169
SRR2967015Control (Tissue:root)2.800

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.816
SRR9715740Leave0.154
SRR9715741Leave0.316
SRR9715739Root0.245
SRR9715742Root0.193
SRR9715743Root0.206

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.715
SRR8749028MeJA induced 9h1.263
SRR8749029MeJA induced 9h1.779
SRR8749030Uninduced0.672
SRR8749031Uninduced0.077
SRR8749032Uninduced0.212

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.405
SRR8400027Control-Root3.157

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved