Gene detail information of Glyur000011s00000642.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G25840.12.00E-143Nucleotidylyl transferase superfamily protein
NRXP_003527850.10PREDICTED: tryptophan--tRNA ligase, mitochondrial-like [Glycine max]
COGYP_003888794.16.00E-140tryptophanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
trEMBLtr|I1K9G7|I1K9G7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G09240.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000117515582491+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01867WARS, trpS EC:6.1.1.2 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006436  tryptophanyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004830  tryptophan-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000011s00000642.1PF00579.20tRNA-synt_1b583321.70E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.369
SRR1783600control12.331
SRR1783602moderate drought stress12.006
SRR1811619moderate drought stress11.471

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.178
DRR006520Root Summer glycyrrhizin high producing strain10.109
DRR006521Root Winter glycyrrhizin high producing strain16.016
DRR006522Root Winter glycyrrhizin high producing strain15.016
DRR006523Root Summer glycyrrhizin low producing strain12.961
DRR006524Root Summer glycyrrhizin low producing strain12.267
DRR006525Leaf Summer glycyrrhizin high producing strain28.878
DRR006526Leaf Summer glycyrrhizin high producing strain28.677

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.697
SRR2868004Drought Stress(Tissue:root)17.723
SRR2967015Control (Tissue:root)20.058

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.432
SRR9715740Leave27.161
SRR9715741Leave20.489
SRR9715739Root4.280
SRR9715742Root7.825
SRR9715743Root7.332

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.458
SRR8749028MeJA induced 9h14.225
SRR8749029MeJA induced 9h13.075
SRR8749030Uninduced4.769
SRR8749031Uninduced4.583
SRR8749032Uninduced4.142

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.756
SRR8400027Control-Root25.807

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved