Gene detail

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Gene detail information of Glyur000011s00000649.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32850.6	0	nuclear poly(a) polymerase
NR	XP_006581463.1	0	PREDICTED: poly(A) polymerase-like isoform X3 [Glycine max]
COG	YP_003950086.1	2.00E-37	endonuclease/exonuclease/phosphatase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q0WLA9\|PAPS4_ARATH	0	Nuclear poly(A) polymerase 4 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|K7KU06\|K7KU06_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G09310.8}

Sequence

Transcript Sequence

>Glyur000011s00000649.1
GTCCCTTGACCCCGCCCCAAACCCCAAATCCCAATCCCAATCCCAATCCAAATCTAAATCCGCTTCCTTGTTTGAATTTAGGGCATCTCTGAGGAACAATCAAATGCCAGCGATTTGAAAGATGCAAAGTAAGGGTTGGTAGTGGGTTTGATTAGTCGGAATCTAAGTGGAAATGGTGGGTTCCGGTAGCCCCAACGGTGGTTCTACACCCCCACCGCNACCTCAACAAGAACAAGCCAACAAGTACGGGCTCACAAAGCCCATCTCTCTCGCCGGTCCCACCGACGCTGATTTACATCGTAATCTCGAATTGGAGAAGTTCTTGGTTGATGCCGAGCTTTACGAGAGCAATGAAGAAGCTGCAACCAGACGAGAAGTTCTTCGCCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACCCGCCAACGAGGCTACACGGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTTACTTTTGGCTCTTATCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAATCGAGAGGTGACACTGCATCTGGTTACTTTTCCTCAGTTTAGTAAAATCCTTGCCATTGGTTATATCAATGAAGACTTCTTCATCATTTTGCATAACATCCTAGCAGAAATGGAAGAAGTTACTGAACTTCAACCAGTTCCCGATGCACATGTCCCAGTAATGAAGTTCAAGTTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCTCTTTTGGTTGTGCCAGAAGACTTGGATATCTCACATNGTTCCATTCTGCATGATGTTGATGAACAAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATCCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTACGCTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGCGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTCTGCCAGCTTTACCCTAATGCAATCCCTAGTATGCTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGTTTCCCTATATGGGATCCTCGTAGAAACCCAAGGGACAGGTTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTACAATGTCTCAGCAAGCACTCTTCGTGTTATGATCGAACAGTTCCGCTATGGCAACAAGATTTGTGAAGAAATTGAGCTTAACAAAGTCCAATGGAGTGCACTTTTTCAGTCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAATTGCATTAGATGCTGATGATTTACTAGCGTGGAAGGGTTGGGTAGAATCTCGATTGAGACAGTTAACCCTGAAGATAGAGCGAGATACAAATGGGATGTTGCAGTGTCATCCTTATCCACACGAGTATGCAGATACATCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGATTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAGTTTGATATACGTGGAACGGTTGATGAATTCAGACAAGAAATAAATATGTATGTATACTGGAAGCCAGGGATGGAAATATATGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTCCCAGATGGCTACAAACGCACTCGAATGCCAAGACATTTAGGCCATCCGGTTGAAAAAATAGGTGATGATACCACAAAGTGCTACTCTGGATCTAGGTCTCCTGAAAGGTGTATCAAGAGGAAAAACAACCCTGAAATGGCAGATGTGAAACCAGACAAACCAGAGAAGCGGACATCTGTTAGCCCACAGAGGCTAGAGTGTGTTTCACCTGAAAGCTGTACTAGTAAATCAGGCGGTACACCTCAATTGAGTATTGAGTGTATTGAAGGGGTTAGGTTAGTTGGCACAACGACAAAGGATGCTGACAGCAATTGTGAAATTAAGTCATCTGATGGACTCATAGGAAGTGGTACGATTACTGAAGCAGGTGAAATGCAGAATAATGAAACAGGTTTTGTTGACTCCACGCAGGATAGGCTGGAATCACGGGGTTTAGAAGTCCAGAATGAGGTAAGCCTGCTGAACCAGTGGAAGAACCTTACCTTGGGAATTAATGGAGTCGATGGGGAGAAAGCTCAGGATGTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGCATCTANCAACAGCTTGCCAAGCTGGAAAGAGGGCGCTGTTGGTATGGATCAACAGCTAGACAAAACTTGTAATTTCACCACAAGGGCTGAACGTTCAGATCATGTACCTAGTGCCAGCACCCAGAACCTTAATTGNGAGGAGGATGAGTTTGGAGTGAGACACAAATACTCGGGAGGTGAATCGCTGAAGTTGCTGCAGACACTACTACCTGATACTATGTTGGGGCTGTTGCTGTGCTGAGATCCTGTGTGTGGGAATGAGGCTATATTGAACAGTGAGGAGCTGATGTAAATGATGGCAGCTAATCAGACTGGGTTTTTGGGGAGCGTTGTGATGATCGTTTGTGTACATAGATGAACAGCGTGATGGAGTTGCTTAAAGATGCGGTCACGTCCTGTTGTATGTGAAACATGGGCTCATTTCATCTTCAGAGTGTGAATTGTCTCATAAACCTTAACATAATTGCGTACCTTGGATTTTCAAGGAGTGGGGACTTTGTTGTTTGCTTGTGATGTGGATCTGGTTGATGCATCATGTAAATGTAATCAAATAGTCATTTCGGCCAAGCGGTTTAGAAGAGAGAATGGTGAAACAAAAATATTTTGGCGGCATTCAATTGGATGTTGAGATGGTGGGAAAATCATTATGCGCAGGGTTTCGTTGCTCTTTTAGTGAGCACTATCTTGTGAAAAATTTGTATCTTTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	115505	121520	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14376	PAP	EC:2.7.7.19	mRNA surveillance pathway	map03015

Gene Ontology

biological_process

GO:0031123 RNA 3'-end processing

GO:0043631 RNA polyadenylation

cellular_component GO:0005634 nucleus molecular_function GO:0003723 RNA binding GO:0004652 polynucleotide adenylyltransferase activity GO:0016779 nucleotidyltransferase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000649.1	PF04928.12	PAP_central	23	391	4.40E-110
Glyur000011s00000649.1	PF01909.18	NTP_transf_2	99	157	7.50E-05
Glyur000011s00000649.1	PF04926.10	PAP_RNA-bind	394	527	4.90E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.555
SRR1783600	control	34.609
SRR1783602	moderate drought stress	57.801
SRR1811619	moderate drought stress	57.241

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.507
DRR006520	Root Summer glycyrrhizin high producing strain	42.887
DRR006521	Root Winter glycyrrhizin high producing strain	28.898
DRR006522	Root Winter glycyrrhizin high producing strain	27.886
DRR006523	Root Summer glycyrrhizin low producing strain	42.571
DRR006524	Root Summer glycyrrhizin low producing strain	42.551
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.463
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	54.135
SRR2868004	Drought Stress(Tissue:root)	64.032
SRR2967015	Control (Tissue:root)	66.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.068
SRR9715740	Leave	26.636
SRR9715741	Leave	35.671
SRR9715739	Root	6.370
SRR9715742	Root	27.207
SRR9715743	Root	23.616

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.253
SRR8749028	MeJA induced 9h	70.788
SRR8749029	MeJA induced 9h	40.282
SRR8749030	Uninduced	53.166
SRR8749031	Uninduced	77.027
SRR8749032	Uninduced	50.074

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	70.920
SRR8400027	Control-Root	66.140