Gene detail

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Gene detail information of Glyur000011s00000678.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49660.1	0	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_003523762.1	0	PREDICTED: receptor-like protein kinase HSL1-like [Glycine max]
COG	YP_004775215.1	9.00E-47	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|K7KJ03\|K7KJ03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G09370.2}

Sequence

Transcript Sequence

>Glyur000011s00000678.1
TTAATTTCTCTTCTTTCCCTGTATATTACTATCACATTCACATCTATTTCTCTCTCTCTATTTCTTTTTCTTTTTTCATTTTCATTCCTTTTTATCTCTAGGGGTGTGAGTGTGACACAGTTTATATTCTCCTTTACACGAGCTAGTGGTAGTGGAGTATAAACATAAAGCCTCTTTACCAAAGATGTTACTTCACCCCTCCCAGTACTAGTACTACAGCAAGAACCTGCTTTTTCATATCACCAAGGCTTGTCACTGCTAATTATCCCAATTAAGCGATCCACTCACTACTCAACCATTCCGTTCCATCTTATATACATACATCTCTTACTCTCCTCCTTCGTTGCAACAACAACGTTCACACTAACCAACCACACAAACATAACAACCACCCCTTCCATACTTCTCTCTCAGAATGGTTCATCCATCATTAATCTCCTTCCTCTGTGTTATTGGAGTACTNGTGATTTCCATGACCAGCACCAGCAGCAGTACCAACCAGTCTGAGTTTTTTTCTCTGATGAAGGAGTCTCTCAGAGGGAACTACCCTTTGGATTGGAATGATGTCACTGTCACCAATACAGTGGATGGGAATAAACCAGCGTTCTGTGACTTCACGGGAGTGACCTGCAACAACAAAGGGGATGTAACAATTCTCGACCTTTCAGGTTGGTCATCACTCTCTGGAAAGTTCCCCTCAGGTATTTGCTCTTACCTCCCACAGTTGCGTGTTCTGCGCATGGGGTGGACCAAGTTCAAGTTCCCAATAGACAGCATACTCAACTGTTCCCACCTGGAAGAGTTCAACATGAACCACATGTTTCAAACCGGCACACTCCCAGATTTCTCTCCCTTGAAATCTCTCAGGATCCTCGACCTGTCCTACAACNAATTCACCGGCGAATTCCCCGTCTCCGTCTTCAACCTCACCGCTCTCGAGGTCCTGAACTTNAACGAAAACGGATACTTCAAACTGTGGGAGCTCCCAGTGAGCTTTGACAGCATGAGAAAACTCAAGTCCATGGTGTTGTCAACATGCAGTGTGCATGGCAGAATCCCTCCGTCCATAGCAAACATCACCACTCTCGTCGATCTCGAGCTGAGTGGGAACTTCCTCACGGGCCAAATCCCCGCAGAGCTTGGGCTTCTGAAGAACCTGCAACAGCTTGAGCTTTACTATAACTACCACCTTGTTGGTAACATACCAGAGGAGCTGGGGAATCTAACAGAGCTCATAGATTTGGATATGTCTGTGAACAAATTAACGGGGAGCATCCCTGCATCTGTGTGTAGCCTTCCAAAGCTTCAAGTCCTTCAGCTTTACAACAATAGCCTCACAGGAGAAATCCCAGATGCGATTGAAAACTCAACATCACTGAGAATGCTGTCTCTTTACGACAACTTCCTTAGCGGACATGTTCCCATGAAGCTGGGACAGTTCTCTGGGATGGTNGTTCTCGACTTGTCGGAGAACAAGTTGTCTGGTCCGTTGCCAACGGAGGTTTGCAAGGGNGGTAAGCTGCTATACTTTCTTGTTTTGGATAACATGTTCTCTGGGGTGATNCCTGAGAGTTATGCACACTGCATGATGCTGTTGAGGTTTCGGGTCAGTAATAACCGTTTAGGTGGCTCTGTTCCCGAGGGGCTACTTAGTTTACCGCACGTTTCAATCATTGATTTGAGTAGTAATAATTTGACCGGTACAATTCCCGAGATCAATGGAAACTCTAGAAACCTTTCTGAACTGTTCCTACAGAGGAACAAGATTTCTGGGGTCATAACCCCCACGATCTCCCGTGCCATTAACCTTGTCAAGATTGATTTCAGCTATAACCTTTTGTCTGGTCCAATCCCTTCAGAGATTGGGAGCCTGAGGAGGCTCAATTTGCTCATGTTACAAGGGAACAAGCTGAATTCCACCATCCCCGGTTCACTCTCCTCGTTGGGGTCACTCAACCTTCTTGATCTCTCCAACAACCTCTTGACAGGGAGCATCCCTGAGAGTCTCTCTGTACTGCTACCAAACTCCATTAACTTCTCACACAACTTGCTCTCTGGTCCAATCCCTCCCAAACTCATCAAAGGGGGTTTAGTGGAAAGCTTCTCAGGGAACCCGGGTCTTTGTGTGCTACCCGTGTATGCCAATTCCTCAAACCAAAACTTCCCCATGTGTTCGCATTCCTACAAGAGGAAGAGTACAAACACCATCTGGGTAGCTGGGGTATCTGTGGTTCTGATCTTTGTTGGAGCTGCCCTGTTCTTGAAGCGCAGGTGCAGCAAAGACGCCGCAGCAGTGGAACACGAGATCACGCTGTCTTCCTCGTTCTTCTCCTATGACGTTAAGAGCTTTCACAAGATCACTTTCGACCAGAGGGAGATCCTTGAGTCCTTGGTGGATAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAGGATTGAGCTGAAAAGCGGTGATGTTGTTGCTGTCAAGAGGCTGTGGAGTCGAAGTTCCAAGGATTCAGCTCCAGAGGATAGGNTATTTGTGGACAAGGCATTGAAGGCAGAGGTGGAGACACTGGGAAGCATAAGGCACAAGAACATAGTCAAGTTATATTGCTGCTTCTCCAGTTTGGACTGCAGCTTGTTGGTCTATGAGTACATGCCAAATGGTACTCTCTGGGATTCCCTGCACAAGGGTTGGATCCATTTGGATTGGCCTACTCGGTATCGGATTGCACTGGGGATTGCACAGGGTCTGGCATACCTCCACCACGATTTGGTTTTTCCTATCATCCATCGAGACATCAAGTCAACTAATATCCTCCTTGATGAGGATTACCAGCCCAAGGTTGCAGATTTTGGGATCGCCAAGGTTCTGCAAGCAAGAGGCGGCAAGGATTCCACAACAACTGTTATTGCAGGAACATATGGTTACCTAGCCCCAGAATATGCATATTCACCAAGGGCCACTACCAAGTGCGATGTCTACAGTTTTGGGGTGATTTTGATGGAGTTGTTAACTGGGAGGAAGCCCGTTGAAGCAGAGTTTGGGGAGAACAGGAATATTGTCTTCTGGGTTTCAAACAAAGTAGAAGGGAAGGAAGGGGCTAGGCCAAGTGAGGTGTTTGACCCGCGGTTATCGTGTTCATTCAAGGATGACATGATTAGNGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAGCTAGTCGACCAACCATGAAAGAGGTTGTTCAGCTTCTGGTTGAGGCAGAGCCNCGCAGTTCAGATTCTTGCAAGTTGTCATCCAAAGATGTATCAAATGTCACCGTAGTAAAGAAACCATTTGAGTTATAATTATAAGTAGCTTAAAGGGGTAAGTAAGAGGGAGCATATTATGGCAACTAAGATAAATATAAGCAGTCTCTCTCCATGTAACTGAGAGGCTCATTGTAAAGTGGAGAACAAATTACTATAATCTTTTTCTAGGCATGTAGTTTGTAGAATCCCCCTTTGACTCTGGTTCTTCTCCTTGTTGCTATTTCCTTTTCTGATATATACTATTCTGAGTTTTGACTTTTTGTAAAAAATTTGAGATCACTTTGCTATCCCAGCTTTACAGTAAAGTACAGTATCTATATTTCACAGGTCCACACTTGATATCATTTGCCTACTTGCTTTGTGGAATTTGGTTTTTTTCCTCTTCTATCATCACTTTTGTTTTGGTTGATTCAACATGGCTCCAATGAAAGGAGCATATGATGGTGAGGACCAGAAGGTTGTGATTCGCATGGGGCTCCTTTATTATATATGTTAAAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00011	311233	315377	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000011s00000678.1	PF00560.28	LRR_1	149	169	0.15
Glyur000011s00000678.1	PF00560.28	LRR_1	296	317	0.82
Glyur000011s00000678.1	PF00560.28	LRR_1	512	533	0.92
Glyur000011s00000678.1	PF00069.20	Pkinase	662	937	2.80E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.479
SRR1783600	control	43.772
SRR1783602	moderate drought stress	76.781
SRR1811619	moderate drought stress	76.082

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.546
DRR006520	Root Summer glycyrrhizin high producing strain	55.050
DRR006521	Root Winter glycyrrhizin high producing strain	0.972
DRR006522	Root Winter glycyrrhizin high producing strain	0.947
DRR006523	Root Summer glycyrrhizin low producing strain	33.178
DRR006524	Root Summer glycyrrhizin low producing strain	33.231
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.958

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	38.525
SRR2868004	Drought Stress(Tissue:root)	58.765
SRR2967015	Control (Tissue:root)	62.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	12.160
SRR9715740	Leave	14.827
SRR9715741	Leave	17.399
SRR9715739	Root	21.311
SRR9715742	Root	43.001
SRR9715743	Root	38.046

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.413
SRR8749028	MeJA induced 9h	0.159
SRR8749029	MeJA induced 9h	0.097
SRR8749030	Uninduced	0.017
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	25.061
SRR8400027	Control-Root	20.602