Gene detail information of Glyur000011s00000695.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G49665.12.00E-162Zinc finger (C3HC4-type RING finger) family protein
NRXP_004501062.10PREDICTED: uncharacterized protein LOC101490612 [Cicer arietinum]
COGYP_007099541.18.00E-13uncharacterized protein containing a von Willebrand factor type A (vWA) domain [Chamaesiphon minutus PCC 6605]
trEMBLtr|G7J445|G7J445_MEDTR0Zinc finger (C3HC4-type RING finger) family protein {ECO:0000313|EMBL:AES73945.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00011425408427899-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000011s00000695.1PF13639.1zf-RING_21221671.10E-07
Glyur000011s00000695.1PF00092.23VWA3635103.40E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.699
SRR1783600control8.547
SRR1783602moderate drought stress6.251
SRR1811619moderate drought stress6.107

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.046
DRR006520Root Summer glycyrrhizin high producing strain2.170
DRR006521Root Winter glycyrrhizin high producing strain0.188
DRR006522Root Winter glycyrrhizin high producing strain0.104
DRR006523Root Summer glycyrrhizin low producing strain3.388
DRR006524Root Summer glycyrrhizin low producing strain3.316
DRR006525Leaf Summer glycyrrhizin high producing strain3.154
DRR006526Leaf Summer glycyrrhizin high producing strain3.233

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.508
SRR2868004Drought Stress(Tissue:root)44.398
SRR2967015Control (Tissue:root)50.674

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.842
SRR9715740Leave9.102
SRR9715741Leave11.887
SRR9715739Root66.773
SRR9715742Root124.166
SRR9715743Root105.188

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.354
SRR8749028MeJA induced 9h21.837
SRR8749029MeJA induced 9h8.779
SRR8749030Uninduced15.259
SRR8749031Uninduced1.749
SRR8749032Uninduced3.806

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.893
SRR8400027Control-Root26.416

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved