Gene detail information of Glyur000011s00000713.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09890.10Rhamnogalacturonate lyase family protein
NRXP_008378659.10PREDICTED: probable rhamnogalacturonate lyase B [Malus domestica]
trEMBLtr|A0A061FFK8|A0A061FFK8_THECC0Rhamnogalacturonate lyase family protein {ECO:0000313|EMBL:EOY15517.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00011517559540791-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000011s00000713.1PF06045.6Rhamnogal_lyase51874.30E-82
Glyur000011s00000713.1PF14686.1fn3_33184161.20E-25
Glyur000011s00000713.1PF14683.1CBM-like4266152.00E-53
Glyur000011s00000713.1PF06045.6Rhamnogal_lyase6258059.90E-90
Glyur000011s00000713.1PF14686.1fn3_393410342.00E-27
Glyur000011s00000713.1PF14683.1CBM-like104312331.10E-57
Glyur000011s00000713.1PF06045.6Rhamnogal_lyase124014451.90E-90
Glyur000011s00000713.1PF14686.1fn3_3158016798.10E-28
Glyur000011s00000713.1PF14683.1CBM-like168918799.80E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.283
SRR1783600control11.254
SRR1783602moderate drought stress11.010
SRR1811619moderate drought stress10.966

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.595
DRR006520Root Summer glycyrrhizin high producing strain12.458
DRR006521Root Winter glycyrrhizin high producing strain10.134
DRR006522Root Winter glycyrrhizin high producing strain9.844
DRR006523Root Summer glycyrrhizin low producing strain15.376
DRR006524Root Summer glycyrrhizin low producing strain15.716
DRR006525Leaf Summer glycyrrhizin high producing strain3.450
DRR006526Leaf Summer glycyrrhizin high producing strain3.472

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.246
SRR2868004Drought Stress(Tissue:root)11.655
SRR2967015Control (Tissue:root)9.795

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.055
SRR9715740Leave7.526
SRR9715741Leave6.593
SRR9715739Root3.759
SRR9715742Root7.993
SRR9715743Root7.058

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.791
SRR8749028MeJA induced 9h19.004
SRR8749029MeJA induced 9h11.429
SRR8749030Uninduced59.240
SRR8749031Uninduced36.916
SRR8749032Uninduced22.686

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.963
SRR8400027Control-Root17.123

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved