Gene detail information of Glyur000011s00000725.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19300.1 | 4.00E-137 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_003528195.1 | 0 | PREDICTED: probable galacturonosyltransferase-like 1-like [Glycine max] |
| COG | YP_007062961.1 | 4.00E-22 | LPS:glycosyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q9LN68|GATL1_ARATH | 2.00E-178 | Probable galacturonosyltransferase-like 1 |
| trEMBL | tr|I1K7U4|I1K7U4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G03770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00011 | 591889 | 592986 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000011s00000725.1 | PF01501.15 | Glyco_transf_8 | 80 | 339 | 1.80E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.487 |
| SRR1783600 | control | 3.463 |
| SRR1783602 | moderate drought stress | 2.094 |
| SRR1811619 | moderate drought stress | 2.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.992 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.035 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.446 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.432 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.635 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.181 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.928 |
| SRR2967015 | Control (Tissue:root) | 10.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.182 |
| SRR9715740 | Leave | 14.506 |
| SRR9715741 | Leave | 23.337 |
| SRR9715739 | Root | 12.497 |
| SRR9715742 | Root | 26.960 |
| SRR9715743 | Root | 22.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.650 |
| SRR8749028 | MeJA induced 9h | 1.465 |
| SRR8749029 | MeJA induced 9h | 1.197 |
| SRR8749030 | Uninduced | 0.648 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.671 |
| SRR8400027 | Control-Root | 4.359 |