Gene detail information of Glyur000011s00000732.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G75090.14.00E-84DNA glycosylase superfamily protein
NRKHN04553.15.10E-127Putative GMP synthase [glutamine-hydrolyzing] [Glycine soja]
COGNP_621791.14.00E-573-methyladenine DNA glycosylase [Thermoanaerobacter tengcongensis MB4]
trEMBLtr|I1JTD2|I1JTD2_SOYBN2.00E-126Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03600.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00011641499642423-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01246tag EC:3.2.2.20 Base excision repair map03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003824  catalytic activity

GO:0008725  DNA-3-methyladenine glycosylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000011s00000732.1PF03352.8Adenine_glyco191932.40E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.157
SRR1783600control3.132
SRR1783602moderate drought stress2.978
SRR1811619moderate drought stress2.856

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.186
DRR006520Root Summer glycyrrhizin high producing strain10.973
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain3.254
DRR006524Root Summer glycyrrhizin low producing strain3.165
DRR006525Leaf Summer glycyrrhizin high producing strain10.692
DRR006526Leaf Summer glycyrrhizin high producing strain11.702

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.091
SRR2868004Drought Stress(Tissue:root)7.233
SRR2967015Control (Tissue:root)12.456

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.345
SRR9715740Leave5.976
SRR9715741Leave14.135
SRR9715739Root1.469
SRR9715742Root3.437
SRR9715743Root3.145

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.310
SRR8749028MeJA induced 9h6.314
SRR8749029MeJA induced 9h8.682
SRR8749030Uninduced0.904
SRR8749031Uninduced0.102
SRR8749032Uninduced0.818

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.309
SRR8400027Control-Root15.772

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved