Gene detail information of Glyur000012s00000517.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14270.10phosphatidylinositol-4-phosphate 5-kinase family protein
NRKHN17761.101-phosphatidylinositol-3-phosphate 5-kinase FAB1 [Glycine soja]
COGNP_147591.28.00E-19thermosome alpha subunit [Aeropyrum pernix K1]
Swissprottr|Q9LUM0|FAB1B_ARATH01-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBLtr|I1MS35|I1MS35_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05000.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000121259821646+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00921PIKFYVE, FAB1 EC:2.7.1.150 Inositol phosphate metabolism map00562
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Regulation of actin cytoskeletonmap04810


Gene Ontology

biological_process

GO:0046488  phosphatidylinositol metabolic process


molecular_function

GO:0005524  ATP binding

GO:0016307  phosphatidylinositol phosphate kinase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000517.1PF01363.16FYVE331013.20E-18
Glyur000012s00000517.1PF00118.19Cpn60_TCP13876413.30E-29
Glyur000012s00000517.1PF01504.13PIP5K132915503.90E-56


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.792
SRR1783600control21.879
SRR1783602moderate drought stress22.160
SRR1811619moderate drought stress22.014

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.543
DRR006520Root Summer glycyrrhizin high producing strain18.212
DRR006521Root Winter glycyrrhizin high producing strain19.039
DRR006522Root Winter glycyrrhizin high producing strain18.765
DRR006523Root Summer glycyrrhizin low producing strain14.488
DRR006524Root Summer glycyrrhizin low producing strain14.592
DRR006525Leaf Summer glycyrrhizin high producing strain31.362
DRR006526Leaf Summer glycyrrhizin high producing strain31.086

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.250
SRR2868004Drought Stress(Tissue:root)32.193
SRR2967015Control (Tissue:root)31.267

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.244
SRR9715740Leave51.176
SRR9715741Leave45.198
SRR9715739Root7.039
SRR9715742Root28.902
SRR9715743Root26.306

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.105
SRR8749028MeJA induced 9h10.073
SRR8749029MeJA induced 9h6.364
SRR8749030Uninduced7.676
SRR8749031Uninduced2.994
SRR8749032Uninduced4.447

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.153
SRR8400027Control-Root29.321

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved