Gene detail information of Glyur000012s00000523.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G43270.10Plant invertase/pectin methylesterase inhibitor superfamily
NRXP_004508051.10PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum]
COGYP_003091437.11.00E-51pectinesterase [Pedobacter heparinus DSM 2366]
Swissprottr|Q43062|PME_PRUPE0Pectinesterase PPE8B (Precursor)
trEMBLtr|W9RVY7|W9RVY7_9ROSA0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000124105859483-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000012s00000523.1PF04043.10PMEI511724.30E-15
Glyur000012s00000523.1PF01095.14Pectinesterase2175141.10E-142
Glyur000012s00000523.1PF04043.10PMEI5837313.80E-21
Glyur000012s00000523.1PF01095.14Pectinesterase77610553.10E-112
Glyur000012s00000523.1PF04043.10PMEI114612971.60E-25
Glyur000012s00000523.1PF01095.14Pectinesterase136915811.50E-104


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.100
SRR1783600control5.019
SRR1783602moderate drought stress0.799
SRR1811619moderate drought stress5.538

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.948
DRR006520Root Summer glycyrrhizin high producing strain9.626
DRR006521Root Winter glycyrrhizin high producing strain2.784
DRR006522Root Winter glycyrrhizin high producing strain9.573
DRR006523Root Summer glycyrrhizin low producing strain1.355
DRR006524Root Summer glycyrrhizin low producing strain1.493
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain2.760

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.567
SRR2868004Drought Stress(Tissue:root)15.920
SRR2967015Control (Tissue:root)7.505

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.342
SRR9715740Leave7.666
SRR9715741Leave0.000
SRR9715739Root6.580
SRR9715742Root9.363
SRR9715743Root0.661

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.984
SRR8749028MeJA induced 9h12.853
SRR8749029MeJA induced 9h8.086
SRR8749030Uninduced6.290
SRR8749031Uninduced7.624
SRR8749032Uninduced13.589

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.498
SRR8400027Control-Root6.451

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved